Job Description Q9VYM1 Confidence 20.67% Date Tue Jan 22 11:43:10 GMT 2013 Rank 157 Aligned Residues 92 % Identity 5% Template c3lv9A_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:putative transporter; PDBTitle: crystal structure of cbs domain of a putative transporter from2 clostridium difficile 630 Resolution 2.40 Å

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		1306	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	T	I	P	L	E	R	Q	G	W	Y	H	G	A	I	T	R	I	E	A	E	T	T	L	R	P	L	S	E	G	S	F	L	V	R	N	C	E	S	T	K	Q	D	Y	S	L	S	L	K	G	A	K	G	F	M	H	M	R	I	Q	R	N	E	T	G	Q	Y	I	L	G	Q	F	S	R	P	F	E	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	X	V	P	R	T	D	X	V	C	I	Y	E	S	D	S	E	E	K	I	L	A	I	L	K	E	E	G	V	T	R	Y	P	V	C	R	K	N	K	D	D	I	L	G	F	V	H	I	R	D	L	Y	N	Q	K	I	N	E	N	K	I	E	L	E	E	I	L	R	D	I	I	Y	I	S	E	N	L	T	I
Template Known Secondary structure		G	T	S			T	T	T						T	T													S			S						S	S	S	T	T	S																		S				G	G	G	T		B							T	T	S	B
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		1386	.	.	.	1390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	M	I	R	H	F	C	L	N	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	A	L	E	R	I	R	K	E	K	L
Template Known Secondary structure												T
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions