Job Description Q9VYM1 Confidence 23.17% Date Tue Jan 22 11:43:10 GMT 2013 Rank 149 Aligned Residues 43 % Identity 23% Template c3f9kV_ PDB info PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Resolution 3.20 Å

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		1311	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	R	Q	G	W	Y	H	G	A	I	T	R	I	E	A	E	T	T	L	R	P	L	S	E	G	S	F	L	V	R	N	C	E	S	T	K	Q	D	Y	S	L	S	L	K	G	A	K	G	F	M	H	M	R	I	Q	R	N	E	T	G	Q	Y	I	L
Query Conservation
Alig confidence								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		L	S	H	K	F	G	.	.	.	.	I	P	N	L	V	A	R	Q	I	V	N	S	C	A	Q	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	A	E	L	G	T	W	Q	M	D	C	T	H	L	E	G	.	K	I	I	I
Template Known Secondary structure								.	.	.	.												T	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T										T	T	.
Template Predicted Secondary structure								.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		22	.	.	.	.	.					.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions