Return to main results Retrieve Phyre Job Id

Job DescriptionQ961S1
Confidence99.98%DateWed Feb 13 11:30:56 GMT 2013
Rank10Aligned Residues139
% Identity22%Templatec2ngrB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:protein (gtpase activating protein (rhg)); PDBTitle: transition state complex for gtp hydrolysis by cdc42:2 comparisons of the high resolution structures for cdc423 bound to the active and catalytically compromised forms of4 the cdc42-gap.
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   298.300.........310.... .....320.........330.........340.........350.........360.........370......
Predicted Secondary structure 









.





























Query SS confidence 
















.





























































Query Sequence  IRGVFGTDLTTMVQLEP. HHQIPFVVRRCVEEVEARGMLQEGIYRVSGFADEIEALKLALDREGEKTDMSETAYGNVNVI
Query Conservation      

  
        .   

  
  

  

  

  




  
    
  
                   


 
Alig confidence 
















.





















































...




Template Conservation     


  
  
         

  
      
   
   




  
       
                ...    
Template Sequence  PNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFARSANTQVVREVQQKYNMGLPVDFDQYN. . . ELHLP
Template Known Secondary structure  TT

SS

T
SS

SS

TT
TTTTTS


TT



TTSS
...
S
Template Predicted Secondary structure 








































...
Template SS confidence 















































































   261........270.........280.........290.........300.........310.........320.........330.. .....
 
   377..380.........390.........400.........410.........420.........430.........440
Predicted Secondary structure 













Query SS confidence 































































Query Sequence  AGTLKLYLRLLPVPLITFQAYPSFMAAGRTGKQAEQRQLMAEAVRRLPPAHHSCLQYMLEHLKR
Query Conservation 
  

  

 





                       
   
  

  
  

  
  

 
Alig confidence 
































.





























Template Conservation 
  

  

 

 


                 .     
   
  

      
  
   
  
Template Sequence  AVILKTFLRELPEPLLTFDLYPHVVGFLNIDES. QRVPATLQVLQTLPEENYQVLRFLTAFLVQ
Template Known Secondary structure  TSSS
TT
GGGTGGGS
GG.GTTS
Template Predicted Secondary structure 










.

Template SS confidence 































































   338.340.........350.........360.........370 .........380.........390.........400
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions