 |
| Job Description | Q961S1 | | Confidence | 94.13% | Date | Wed Feb 13 11:30:56 GMT 2013 |
| Rank | 150 | Aligned Residues | 76 |
| % Identity | 11% | Template | c1bg1A_ |
| PDB info |
PDB header:transcription/dna | Chain: A: PDB Molecule:protein (transcription factor stat3b); |
PDBTitle: transcription factor stat3b/dna complex
|
| Resolution | 2.25 Å |
|
 |
|   |   |
78 | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | |
. | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
| . |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
L | Y | G | S | E | Y | H | G | L | M | G | H | L | E | A | E | Q | L | L | A | N | A | R | D | G | S | Y | F | V | R | R | S | P | Q | . |
S | D | G | Y | Y | T | L | S | L | R | F | N | K | R | P | K | H | Y | K | L | L | Y | K | P | G | V | G | H | Y | L | R | G | Q | D | K | R | F | D | T | V | H | D | M | V | A |
| Query Conservation |   |
  |   |
|   |   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |
|
|
|   |
|   |   | . |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |
|   |   |
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
| . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
| Template Sequence |   |
W | N | E | G | Y | I | M | G | F | I | S | K | E | R | E | R | A | I | L | S | T | K | P | P | G | T | F | L | L | R | F | S | E | S | S | K | E | G | G | V | T | F | T | W | V | E | K | D | I | S | G | S | T | Q | I | Q | S | V | E | P | . |
. |
. |
. |
Y | T | K | Q | Q | L | N | N | M | S | F | A | E | I | I | M |
| Template Known Secondary structure |   |
 |  | S | S |
|
|
| B |
|
|
| T | T | G | G | G | T | T | T | T | T | S |
| T | T |
| B |
|  |  |  |
| S | S |
| S | S |
|
|  |  |  |
|
|
|
| S | S | S |
| S | S |
|
|
|
|
|
|
|
| . | . | . | . | B |
| G | G | G | G | T | S | S |
|  |  |  |  | T | T |
| Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|  |  |  |  |
|
|
|
|  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . | . | . | . | . | . | . | 610 | . | . | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | |
|
|
|
640 | . | . | . | . | . | . | . | . | . | 650 | . | . | . | . | . |
|   |
|   |   |
157 |
| Predicted Secondary structure |   |
|
| Query SS confidence |   |
|
| Query Sequence |   |
D |
| Query Conservation |   |
  |
| Alig confidence |   |
|
| Template Conservation |   |
  |
| Template Sequence |   |
G |
| Template Known Secondary structure |   |
S |
| Template Predicted Secondary structure |   |
 |
| Template SS confidence |   |
|
|   |   |
656 |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|