 |
| Job Description | O74352 | | Confidence | 98.56% | Date | Sun Jul 8 11:50:45 BST 2012 |
| Rank | 215 | Aligned Residues | 76 |
| % Identity | 25% | Template | c2xkxB_ |
| PDB info |
PDB header:structural protein | Chain: B: PDB Molecule:disks large homolog 4; |
PDBTitle: single particle analysis of psd-95 in negative stain
|
| Resolution | 22.9 Å |
|
 |
|   |   |
385 | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | |
|
|
|
|
|
. | . |
| Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
| Query Sequence |   |
A | P | V | A | A | A | A | A | A | V | P | V | P | P | P | A | P | A | P | A | A | A | P | A | A | E | H | V | V | A | L | Y | D | Y | A | A | Q | A | A | G | . |
. |
. |
. |
. |
D | L | S | F | H | A | G | D | R | I | E | V | V | S | R | T | D | N | Q | N | E | W | W | I | G | R | L | . |
. |
. |
. |
. |
. |
N | G |
| Query Conservation |   |
  |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |
|   |   |   |   | . | . | . | . | . |
|
|
|   |   |   |
|
|   |
|   |
|   |   |   |   |
|   |   |
|
|
|
|   |
|   |   | . | . | . | . | . | . |   |
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
| Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |
|
|
|
|   |
|   |   |
|   |   | . | . |   |   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |
| Template Sequence |   |
D | L | R | E | Q | L | M | N | S | S | L | G | S | G | T | A | S | L | R | S | N | P | K | R | G | F | Y | I | R | A | L | F | D | Y | D | K | T | K | D | C | G | F | L | S | Q | A | L | S | F | R | F | G | D | V | L | H | V | I | D | A | G | D | . |
. |
E | E | W | W | Q | A | R | R | V | H | S | D | S | E | T | D |
| Template Known Secondary structure |   |
|
|
|
|
| S |
|
|
|
| S |
|
| T | T | T | T |
|
|
|
| S | S | S | S | S |  |  |  |  | S | S |
| B |
|  |  |  |  | S |
|
|
| S | S | B |
|
| B |
| T | T |
|
|  |  |  |  |  |
|
| S | . | . | S | S |  |  |  |  |  |  |
|
| S | S |
| T | T | S |
| Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
| . | . |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
403 | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | |
|
. | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 |
|   |
|   |   |
454 | . | . | . | . | . | 460 | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | Q | G | Q | F | P | G | N | Y |
| Query Conservation |   |
  |   |
|   |
|
|   |
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |
|   |
|
|
|   |   |
| Template Sequence |   |
D | I | G | F | I | P | S | K | R |
| Template Known Secondary structure |   |
|
|  |  |  |  |
|  |  |
| Template Predicted Secondary structure |   |
|  |  |  |
|
|
|  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|   |   |
481 | . | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|