Job Description O74352 Confidence 83.35% Date Sun Jul 8 11:50:45 BST 2012 Rank 253 Aligned Residues 85 % Identity 14% Template c2wr2B_ PDB info PDB header:viral protein Chain: B: PDB Molecule:hemagglutinin; PDBTitle: structure of influenza h2 avian hemagglutinin with avian2 receptor Resolution 2.40 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.				.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.				.	.	.	.	.
Predicted Secondary structure																		.	.	.																																																						.	.	.
Query SS confidence																		.	.	.																																																						.	.	.
Query Sequence		W	K	G	F	T	K	A	L	A	R	T	P	Q	T	L	R	.	.	.	S	K	F	N	V	G	E	I	T	K	D	P	I	Y	E	D	A	G	R	R	F	K	S	L	E	T	E	A	K	K	L	A	E	D	A	K	K	Y	T	D	A	I	N	G	L	L	N	H	Q	I	G	F	A	.	.	.	D	A	C	I	E
Query Conservation																		.	.	.																																																						.	.	.
Alig confidence																		.	.	.																																																						.	.	.
Template Conservation
Template Sequence		K	E	S	T	Q	K	A	F	D	G	I	T	N	K	V	N	S	V	I	E	K	M	N	T	Q	F	E	A	V	G	K	E	F	S	N	L	E	R	R	L	E	N	L	N	K	K	M	E	D	G	F	L	D	V	W	T	Y	N	A	E	L	L	V	L	M	E	N	E	R	T	L	D	F	H	D	S	N	V	K	N
Template Known Secondary structure																						T														T	T
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		77	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Y	K	P	I	S	G	R	A	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	D	K	V	R	M	Q	L	R	D
Template Known Secondary structure											G	G
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions