Job Description O74352 Confidence 29.53% Date Sun Jul 8 11:50:45 BST 2012 Rank 312 Aligned Residues 213 % Identity 12% Template c2oevA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: crystal structure of alix/aip1 Resolution 3.30 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		W	K	G	F	T	K	A	L	A	R	T	P	Q	T	L	R	S	K	F	N	V	G	E	I	T	K	.	.	D	P	I	Y	E	D	A	G	R	R	F	K	S	L	E	T	E	A	K	K	L	A	E	D	A	K	K	Y	T	D	A	I	N	G	L	L	N	H	Q	I	G	F	A	D	A	C	I	E	I	Y	K	P
Query Conservation																												.	.
Alig confidence																												.	.
Template Conservation
Template Sequence		S	L	R	L	L	D	E	E	E	A	T	D	N	D	L	R	A	K	F	K	E	R	W	Q	R	T	P	S	N	E	L	Y	K	P	L	R	A	E	G	T	N	F	R	T	V	L	D	K	A	V	Q	A	D	G	Q	V	K	E	C	Y	Q	S	H	R	D	T	I	V	L	L	C	K	P	E	P	E	L	N	A	A
Template Known Secondary structure																		T	T	S	S	S	S			S							S	S																													T	T								T	S
Template Predicted Secondary structure
Template SS confidence
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.																	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	S	G	R	A	S	D	P	E	S	Y	E	Q	E	G	N	A	E	G	I	E	A	A	E	A	Y	K	E	I	V	Y	D	L	Q	K	N	L	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	M	D	V	I	N	T	R	I	V	N	P	T	G	E	L	L	K	I	V	K	D	V	D	K
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	P	S	A	N	P	A	K	T	M	Q	G	S	E	V	V	N	V	L	K	S	L	L	S	N	L	D	E	V	K	K	E	R	E	G	L	E	N	D	L	K	S	V	N	F	D	M	T	S	K	F	L	T	A	L	A	Q	D	G	V	I	N	E	E	A	L	S	V	T	E	L	D	R	V	Y	G	G	L	T	T
Template Known Secondary structure		S							S	S		S	S																																														S	S	S															T
Template Predicted Secondary structure
Template SS confidence
		534	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	L	K	R	D	H	K	Q	L	D	Y	D	R	H	R	S	S	F	K	K	L	Q	E	K	K	D	K	S	L	K	D	E	K	K	L	Y	E	A	E	T	A	F	E	Q	S	S	Q	E	Y	E	Y	Y	N	E	M	L	K	E	E	L	P	K	L	F	A	L	A	Q	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	Q	E	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	M	K	Q	S	N	N	E	A	N	L	R	E	E	V	L	K	N	L	A	T	A	Y	D	N	F	V	E	L	V	A	N	L	K	E	G	T	K	F	Y	N	E	L	T	E	I	L
Template Known Secondary structure																												S			S	S
Template Predicted Secondary structure
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions