Job Description O74352 Confidence 46.72% Date Sun Jul 8 11:50:45 BST 2012 Rank 287 Aligned Residues 93 % Identity 14% Template c1hgeD_ PDB info PDB header:viral protein Chain: D: PDB Molecule:hemagglutinin, (g135r), ha1 chain; PDBTitle: binding of influenza virus hemagglutinin to analogs of its cell-2 surface receptor, sialic acid: analysis by proton nuclear magnetic3 resonance spectroscopy and x-ray crystallography Resolution 2.60 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		W	K	G	F	T	K	A	L	A	R	T	P	Q	T	L	R	S	K	F	N	V	G	E	I	.	.	.	T	K	D	P	I	Y	E	D	A	G	R	R	F	K	S	L	E	T	E	A	K	K	L	A	E	D	A	K	K	Y	T	D	A	I	N	G	L	L	N	H	Q	I	G	F	A	D	A	C	I	E	I	Y	K
Query Conservation																										.	.	.
Alig confidence																										.	.	.
Template Conservation
Template Sequence		L	K	S	T	Q	A	A	I	D	Q	I	N	G	K	L	N	R	V	I	E	K	T	N	E	K	F	H	Q	I	E	K	E	F	S	E	V	E	G	R	I	Q	D	L	E	K	Y	V	E	D	T	K	I	D	L	W	S	Y	N	A	E	L	L	V	A	L	E	N	Q	H	T	I	D	L	T	D	S	E	M	N	K
Template Known Secondary structure																					S							S							S	S
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	S	G	R	A	S	D	P	E	S	Y	E	Q	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	E	K	T	R	R	Q	L	R	E	N	A	E	E	M
Template Known Secondary structure											G	G	G
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions