 |
Job Description | C6Y4A7 | Confidence | 4.85% | Date | Sun Jul 8 11:45:05 BST 2012 |
Rank | 14 | Aligned Residues | 30 |
% Identity | 30% | Template | c3sbgA_ |
PDB info |
PDB header:splicing | Chain: A: PDB Molecule:pre-mrna-splicing factor 8; |
PDBTitle: crystal structure of a prp8 c-terminal fragment
|
Resolution | 3.28 Å |
|
  |   |
59 | 60 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
| . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | T | V | I | I | A | S | P | . |
. |
. |
. |
. |
. |
L | R | S | I | Q | L | N | K | W | S | H | Q | R | S | D | L | A | F | L | N | S | R | T | N | F | L | R | I | K | E | L | K | E | K | I | E | K | V | K |
Query Conservation |   |
|   |
|
|
|
|   |   | . | . | . | . | . | . |
|
|
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|
|
|   |   |
|   |
|
|   |   |
|
|
|
|   |   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|   |
|
|
|
|   |
|
|   |
|   |
|
|
|
|
|   |
|   |   |   |
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|
|
|
|
|
Template Sequence |   |
G | C | I | F | T | L | N | P | K | T | G | H | L | F | L | K | I | I | H | T | S | V | W | A | G | Q | K | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | S | Q | L | A | K | W | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |
| T | T | T |
|  |  |  |  |  |  |  |
| G | G | G | G | T | T |
| S | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |
|
|  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1877 | . | . | 1880 | . | . | . | . | . | . | . | . | . | 1890 | . | . | . | . | . | . | . | . | . | 1900 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 1910 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|