Return to main results Retrieve Phyre Job Id

Job DescriptionA6X969
Confidence5.40%DateSun Jul 8 11:45:01 BST 2012
Rank12Aligned Residues15
% Identity13%Templatec3cueJ_
PDB info PDB header:protein transportChain: J: PDB Molecule:transport protein particle 22 kda subunit; PDBTitle: crystal structure of a trapp subassembly activating the rab ypt1p
Resolution3.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.......
Predicted Secondary structure 

Query SS confidence 














Query Sequence  LCFFNATTYWKLFFG
Query Conservation 














Alig confidence 














Template Conservation   
 

    

 


Template Sequence  TSEVLSKCAFKIFLN
Template Known Secondary structure  SS
Template Predicted Secondary structure 
Template SS confidence 














   86...90.........100
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions