Return to main results Retrieve Phyre Job Id

Job DescriptionC6Y4C6
Confidence8.27%DateSun Jul 8 11:45:09 BST 2012
Rank8Aligned Residues19
% Identity42%Templatec3f1jA_
PDB info PDB header:viral proteinChain: A: PDB Molecule:matrix protein; PDBTitle: crystal structure of the borna disease virus matrix protein2 (bdv-m) reveals rna binding properties
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30...
Predicted Secondary structure 
Query SS confidence 


















Query Sequence  KVYDVAKNKFIDVFSLRLR
Query Conservation   
   
  










Alig confidence 


















Template Conservation 


















Template Sequence  EQSKHAINAAFNVFSYRLR
Template Known Secondary structure  TTT


Template Predicted Secondary structure 
Template SS confidence 


















   108.110.........120......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions