Job Description C6Y4C5 Confidence 3.73% Date Sun Jul 8 11:45:09 BST 2012 Rank 95 Aligned Residues 49 % Identity 27% Template c4ad7C_ PDB info PDB header:membrane protein Chain: C: PDB Molecule:glypican-1; PDBTitle: crystal structure of full-length n-glycosylated human2 glypican-1 Resolution 2.94 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	Q	D	C	P	G	C	G	S	T	S	E	Q	C	S	Y	S	K	S	A	D	L	H	M	L	S	S	Q	Y	L	D	H	F	R	R	R	S	S	M	P	S	P	S	T	S	S	S	L	L	N	G	F	V	A	S	R	L	A	V
Query Conservation
Alig confidence									.	.	.																									.	.	.	.	.	.	.	.
Template Conservation									.	.	.																									.	.	.	.	.	.	.	.
Template Sequence		H	L	R	I	C	P	Q	.	.	.	G	Y	T	C	C	T	S	E	M	E	E	N	L	A	N	R	S	H	A	E	L	E	T	A	.	.	.	.	.	.	.	.	L	R	D	S	S	R	V	L	Q	A	M	L	A	T	Q	L	R	S
Template Known Secondary structure		T		S	S	S		S	.	.	.	S	S	B	S																					.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.																									.	.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.									.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions