Job Description C6Y4C5 Confidence 9.64% Date Sun Jul 8 11:45:09 BST 2012 Rank 38 Aligned Residues 49 % Identity 31% Template c4acrB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glypican-1; PDBTitle: crystal structure of n-glycosylated, c-terminally truncated2 human glypican-1 Resolution 2.55 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	Q	D	C	P	G	C	G	S	T	S	E	Q	C	S	Y	S	K	S	A	D	L	H	M	L	S	S	Q	Y	L	D	H	F	R	R	R	S	S	M	P	S	P	S	T	S	S	S	L	L	N	G	F	V	A	S	R	L	A	V
Query Conservation
Alig confidence								.					.	.																						.	.	.	.	.	.	.	.
Template Conservation								.					.	.																						.	.	.	.	.	.	.	.
Template Sequence		H	L	R	I	C	P	.	Q	G	Y	T	.	.	C	C	T	S	E	M	E	E	N	L	A	N	R	S	H	A	E	L	E	T	A	.	.	.	.	.	.	.	.	L	R	D	S	S	R	V	L	Q	A	M	L	A	T	Q	L	R	S
Template Known Secondary structure		T		S	S	S		.	S	S	S	B	.	.	S																					.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.					.	.																						.	.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.		.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.									.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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