Job Description O13736 Confidence 34.01% Date Sun Jul 8 11:46:01 BST 2012 Rank 291 Aligned Residues 81 % Identity 7% Template c2b8kG_ PDB info PDB header:transferase Chain: G: PDB Molecule:dna-directed rna polymerase ii 19 kda polypeptide; PDBTitle: 12-subunit rna polymerase ii Resolution 4.15 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.		.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.																	.
Predicted Secondary structure																																												.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	I	Y	K	V	L	Y	S	Y	E	P	Q	E	I	N	P	G	E	E	I	P	E	N	E	R	E	I	S	I	V	E	D	E	I	V	C	L	L	E	K	G	.	E	D	D	W	Y	L	V	K	R	N	V	N	S	N	D	D	D	E	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G
Query Conservation																																												.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.																			.									.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.																												.	.	.
Template Sequence		F	G	Y	I	L	C	V	L	D	Y	D	N	I	D	.	.	.	.	.	.	.	.	.	.	I	Q	R	G	R	I	L	P	T	D	G	S	A	E	F	N	V	K	Y	R	A	V	V	F	K	P	F	.	.	.	K	G	E	V	V	D	G	T	V	V	S	C	S	Q	H	G	F	E	V	Q	V	G	P	M	K	V
Template Known Secondary structure		T									S	T	T		B	.	.	.	.	.	.	.	.	.	.								S	S	S																		.	.	.	T	T												T	T							T	T	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																												.	.	.
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.											.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.							.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.
Query Sequence		I	V	P	S	N	Y	I	T	E	A	E	P	S	T	K	M	K	A	L	Y	D	Y	T	Q	Q	.	.	.	.	.	.	S	V	D	E	I	S	F	Q	A	D	Q	T	L	D	C
Query Conservation																											.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.							.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.	.	.
Template Sequence		F	V	T	K	H	L	M	P	Q	D	.	.	.	.	.	.	.	.	.	L	T	F	N	A	G	S	N	P	P	S	Y	Q	S	S	E	D	V	I	T	I	K	S	R	I	R	V
Template Known Secondary structure					G	G	G	S		S	S	.	.	.	.	.	.	.	.	.				B	S	S		S	S						S	S					T	T
Template Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.										.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions