Job Description O13736 Confidence 90.57% Date Sun Jul 8 11:46:01 BST 2012 Rank 237 Aligned Residues 111 % Identity 17% Template c1m9sA_ PDB info PDB header:signaling protein Chain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains. Resolution 2.65 Å

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		7	.	.	10	.	.	.	.	.	.	.	.		.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure														.																														.	.	.																						.
Query SS confidence														.																														.	.	.																						.
Query Sequence		I	G	I	Y	K	V	L	Y	S	Y	E	P	.	Q	E	I	N	P	G	E	E	I	P	E	N	E	R	E	I	S	I	V	E	D	E	I	V	C	L	L	E	K	.	.	.	G	E	D	D	W	Y	L	V	K	R	N	V	N	S	N	D	D	D	E	E	I	.	G	I	V	P	S	N	Y	I	T	E	A	E	P
Query Conservation														.																														.	.	.																						.
Alig confidence														.					.	.	.	.	.	.	.	.	.	.																.	.	.										.	.	.	.	.	.	.						.
Template Conservation																			.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Sequence		N	S	V	W	T	K	P	Y	N	T	A	G	A	K	H	V	N	.	.	.	.	.	.	.	.	.	.	K	L	S	V	Y	Q	G	K	N	M	R	I	L	R	E	A	K	T	P	I	T	T	W	Y	Q	F	S	.	.	.	.	.	.	.	I	G	G	K	V	I	G	W	V	D	T	R	A	L	N	T	F	Y	K
Template Known Secondary structure					B	S	S	S	S	S	S	T	T						.	.	.	.	.	.	.	.	.	.		G	G	G	G		S	S											S	S								.	.	.	.	.	.	.		T	T								T	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template SS confidence
		488	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.											.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.								.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
		82	.	.																				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.											.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.											.
Query Sequence		S	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	K	A	L	Y	D	Y	T	Q	Q	S	V	D	E	I	S	F	Q	A	D	Q	T	L	D	C	Y	G	D	.	.	.	T	D	S	D	W	I	L	V	G	F	.	N	N	N	F	G	L	A	P	R	N	Y	V
Query Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.											.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.											.
Template Conservation
Template Sequence		Q	S	M	E	K	P	T	R	L	T	R	Y	V	S	A	N	K	A	G	E	S	Y	Y	K	V	P	V	A	D	N	P	V	K	R	G	T	L	A	K	Y	K	N	Q	K	L	I	V	D	C	Q	A	T	I	E	G	Q	L	W	Y	R	I	R	T	S	S	T	F	I	G	W	T	K	A	A	N	L
Template Known Secondary structure		G	G	G												T	T	T	T	T	S				S	S	S	S			G	G	G					G	G	G	S	T	T												T	T									S	S	S							G	G	G
Template Predicted Secondary structure
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions