09/07/2012 18:35:48 : INFO  : Run start: Mon Jul  9 18:35:48 BST 2012
09/07/2012 18:35:48 : INFO  : Initialised job
09/07/2012 18:35:48 : INFO  : Initialised job:
Sequence
>batch____
MSFQLDTSTHGAEIRNVYEKVLSGADDCSWAIFGYEKGQGNILKVVASGNDNDEFLDEFD
ENAVLFGFLRVKDVNTGLNKFVLVCWCGEAAARKGLFSIHMATVSNLLKGYHVQITGRES
SDLNMDDIIRRVADASGSKYSVHTSNSTPQSKHNAFYDASQTFGSTAKVAPAPAPSTKTP
LANISKPVVQAQKDSKDNSWDDSSKQSNTQTANTTSNLRVPVNASWSDAGRKEKSQENKP
KPTPFGSGGPSKPTPFESHGPAKQISVQPSEHPKPSISTTTTGSSYRSAESSHAPTTPDH
FKLTPLTKLEPQPPSGSPSKKPVSELEELHTAGNVNLSARRALFEKKESSTKNVENPVSH
HLKSPVRTSFPPASTTASKQDSPSTVPVDKQETAKPINKQVSSNETSAQEEPRESVAALR
ARFAKANVSENNDPPTFPKTAAKISSFNSKAGTSFAKPRPFTNNPNPISAPEKPTSGESL
SLNPPPAMPKVFPERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPE
VPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPE
APSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPE
APSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVPPLPPHDETQEPQVGGDVKAT
EHTQPTKTPAIVIYDYSPEEENEIELVENEQIQILEFVDDGWWLGENSKGQQGLFPSNYV
EITGPNETANNPPAEPQAGGPGKSVKAIYDYQAQEDNELSFFEDEIIANVDCVDPNWWEG
ECHGHRGLFPSNYVEEI

09/07/2012 18:35:48 : INFO  : Checked sequence
09/07/2012 18:35:48 : INFO  : Finding homologues with PSI-BLAST
09/07/2012 18:35:48 : INFO  : PSI-BLAST 3 iterations
09/07/2012 18:44:20 : INFO  : PSI-BLAST 5 iterations
09/07/2012 19:07:03 : INFO  : Finished PSI-BLAST
09/07/2012 19:07:03 : INFO  : Running Buildali to generate a3m file
09/07/2012 20:15:06 : INFO  : Converting to HMM
09/07/2012 20:16:16 : INFO  : Calibrating HMM
09/07/2012 20:16:32 : INFO  : Searching HMM database
09/07/2012 20:29:09 : INFO  : Finished buildali
09/07/2012 20:29:09 : INFO  : Predicting secondary structure
09/07/2012 20:29:09 : INFO  : Predicted secondary structure (PSI-Pred)
09/07/2012 20:29:09 : INFO  : Predicting Disordered regions
09/07/2012 20:29:09 : INFO  : Predicted Disorder (Disopred)
09/07/2012 20:29:09 : INFO  : Running memsat_svm check
09/07/2012 20:31:24 : INFO  : Running memsat_svm full
09/07/2012 20:31:51 : INFO  : Predicted Transmembrane (memsat_svm) ID 'bf1caf6530568f84'
09/07/2012 20:31:51 : INFO  : Initialising fold library search
09/07/2012 20:31:51 : INFO  : Initialised search input
09/07/2012 20:31:51 : INFO  : Building Ensemble models
09/07/2012 20:31:51 : INFO  : Building hh.c1griA_.model.1.pdb
09/07/2012 20:31:51 : INFO  : Building hh.d1hqz1_.model.2.pdb
09/07/2012 20:31:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/bf1caf6530568f84/hh.d1hqz1_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/bf1caf6530568f84/d1hqz1_.1.pdb
09/07/2012 20:31:52 : INFO  : Building hh.c1x67A_.model.3.pdb
09/07/2012 20:31:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/bf1caf6530568f84/hh.c1x67A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/bf1caf6530568f84/c1x67A_.5.pdb
09/07/2012 20:31:52 : INFO  : Building hh.c1mv3A_.model.4.pdb
09/07/2012 20:31:52 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/bf1caf6530568f84/hh.c1mv3A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/bf1caf6530568f84/c1mv3A_.12.pdb
09/07/2012 20:31:52 : INFO  : Building d1hqz1_.1.pdb
09/07/2012 20:31:53 : INFO  : Building c2lqnA_.2.pdb
09/07/2012 20:31:53 : INFO  : Building c1griA_.3.pdb
09/07/2012 20:31:53 : INFO  : Building c2eyzA_.4.pdb
09/07/2012 20:31:54 : INFO  : Building c1x67A_.5.pdb
09/07/2012 20:31:54 : INFO  : Building d1udma_.6.pdb
09/07/2012 20:31:54 : INFO  : Building c2l3sA_.7.pdb
09/07/2012 20:31:55 : INFO  : Building c1ng2A_.8.pdb
09/07/2012 20:31:55 : INFO  : Building d1wnja_.9.pdb
09/07/2012 20:31:55 : INFO  : Building c1ov3A_.10.pdb
09/07/2012 20:31:55 : INFO  : Building d1t3ya1.11.pdb
09/07/2012 20:31:56 : INFO  : Building c1mv3A_.12.pdb
09/07/2012 20:31:56 : INFO  : Building d1udla_.13.pdb
09/07/2012 20:31:56 : INFO  : Building d1cfya_.14.pdb
09/07/2012 20:31:57 : INFO  : Building d1cnua_.15.pdb
09/07/2012 20:31:57 : INFO  : Building d1ng2a2.16.pdb
09/07/2012 20:31:57 : INFO  : Building c3nmzD_.17.pdb
09/07/2012 20:31:58 : INFO  : Building c2kymA_.18.pdb
09/07/2012 20:31:58 : INFO  : Building c2xfaA_.19.pdb
09/07/2012 20:32:00 : INFO  : Building c1x2qA_.20.pdb
09/07/2012 20:32:03 : INFO  : Finished HH model building
09/07/2012 20:32:03 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
09/07/2012 20:32:05 : INFO  : html domain output complete ID 'bf1caf6530568f84'
09/07/2012 20:46:45 : INFO  : Run end  : Mon Jul  9 20:46:45 BST 2012
