Job Description C6Y4B2 Confidence 19.97% Date Sun Jul 8 11:45:06 BST 2012 Rank 6 Aligned Residues 45 % Identity 18% Template c3qqcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:dna-directed rna polymerase subunit b, dna-directed rna PDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain Resolution 3.30 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	G	T	T	L	Y	V	L	F	K	D	L	V	R	D	Q	E	A	K	S	E	S	K	S	R	K	K	V	M	I	L	V	D	E	T	T	S	E	E	D	I	K	K	W	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	Y	A	F	K	L	L	L	D	E	L	K	A	M	V	I	R	P	K	L	N	L	S	E	K	V	I	G	S	I	E	F	G	I	L	S	P	Q	E	I	R	K	M	S
Template Known Secondary structure																T	T	B																		B									T
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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