Job Description Q09746 Confidence 20.75% Date Sun Jul 8 11:56:56 BST 2012 Rank 327 Aligned Residues 236 % Identity 8% Template c3s84B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:apolipoprotein a-iv; PDBTitle: dimeric apoa-iv Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	T	Y	K	F	S	D	E	L	H	D	D	F	K	V	V	D	S	W	I	N	N	G	A	K	W	L	E	D	I	Q	L	Y	Y	K	E	R	S	S	I	E	K	E	Y	A	Q	K	L	A	S	L	S	N	K	Y	G	E	K	K	S	R	K	S	S	A	L	S	V	G	D	T	P	A	M	S	A	G	S	L	E
Query Conservation
Alig confidence																															.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	S	E	K	L	K	E	E	I	G	K	E	L	E	E	L	R	A	R	L	L	P	H	A	N	E	V	S	Q	.	.	K	I	G	D	N	L	R	E	L	Q	Q	R	L	E	P	Y	A	D	Q	L	R	T	Q	V	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											T											G	G	G							.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		C	A	S	L	T	T	W	S	K	I	L	D	E	L	T	R	S	S	K	T	H	Q	K	L	S	D	D	Y	S	L	D	I	A	E	K	L	K	K	L	E	S	H	I	E	A	L	R	K	V	Y	D	D	L	Y	K	K	F	S	S	E	K	E	T	L	L	N	.	S	V	K	R	A	K	V	S	Y	H	E	A	C
Query Conservation																																																																				.
Alig confidence																																																																				.
Template Conservation
Template Sequence		T	Q	A	E	Q	L	R	R	Q	L	T	P	Y	A	Q	R	M	E	R	V	L	R	E	N	A	D	S	L	Q	A	S	L	R	P	H	A	D	E	L	K	A	K	I	D	Q	N	V	E	E	L	K	G	R	L	T	P	Y	A	D	E	F	K	V	K	I	D	Q	T	V	E	E	L	R	R	S	L	A	P	Y	A
Template Known Secondary structure																																																																														G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	L	E	S	A	R	Q	K	N	D	K	Y	R	E	Q	K	T	Q	R	N	L	K	L	S	E	S	D	M	L	D	K	K	N	K	Y	L	L	R	M	L	V	Y	N	A	H	K	Q	K	F	Y	N	E	T	L	P	T	L	L	N	H	M	Q	V	L	N	E	Y	R	V	S	N	L	N	E	I	W	C	N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	D	T	Q	E	K	L	N	H	Q	L	E	G	L	T	F	Q	M	K	K	N	A	E	E	L	K	A	R	I	S	A	S	A	E	E	L	R	Q	R	L	A	P	L	A	E	D	V	R	G	N	L	R	G	N	T	E	G	L	Q	K	S	L	A	E	L	G	G	H	L	D	Q	Q	V	E	E	F	R	R	R	V
Template Known Secondary structure		T	T																																																S	S	S	S		S	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	I	E	K	S	L	H	D	T	L	S	Q	R	T	V	E	I	Q	S	E	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	P	Y	G	E	N	F	N	K	A	L	V	Q	Q	M	E	Q	L	R	Q	K	L	G
Template Known Secondary structure		T	T																					S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions