Job Description Q09746 Confidence 99.43% Date Sun Jul 8 11:56:56 BST 2012 Rank 205 Aligned Residues 53 % Identity 38% Template c3rebD_ PDB info PDB header:protein binding Chain: D: PDB Molecule:tyrosine-protein kinase hck; PDBTitle: hiv-1 nef protein in complex with engineered hck-sh3 domain Resolution 3.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.			.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
Predicted Secondary structure																																										.	.
Query SS confidence																																										.	.
Query Sequence		Y	V	K	A	L	Y	A	Y	T	A	Q	S	D	M	E	L	S	I	Q	E	G	D	I	I	Q	V	T	N	R	N	A	G	N	G	W	S	E	G	I	L	.	.	N	G	V	T	G	Q	F	P	A	N	Y	V	T	D	V
Query Conservation																																										.	.
Alig confidence																																		.	.							.	.
Template Conservation																																		.	.
Template Sequence		I	V	V	A	L	Y	D	Y	V	S	W	S	P	D	D	L	S	F	Q	K	G	D	Q	M	V	V	L	E	E	S	G	E	.	.	W	W	K	A	R	S	L	A	T	R	K	E	G	Y	I	P	S	N	Y	V	A	R	V
Template Known Secondary structure						S	S		B			S	S	T	T	B			B		T	T									S	S	S	.	.							T	T	T								G	G	G
Template Predicted Secondary structure																																		.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions