Job Description Q09746 Confidence 99.87% Date Sun Jul 8 11:56:56 BST 2012 Rank 11 Aligned Residues 259 % Identity 24% Template c3i2wB_ PDB info PDB header:endocytosis Chain: B: PDB Molecule:syndapin; PDBTitle: crystal structure of efc/f-bar domain of drosophila2 syndapin/pacsin Resolution 2.67 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	S	D	E	L	H	D	D	F	K	V	V	D	S	W	I	N	N	G	A	K	W	L	E	D	I	Q	L	Y	Y	K	E	R	S	S	I	E	K	E	Y	A	Q	K	L	A	S	L	S	N	K	Y	G	E	K	K	S	R	K	S	S	A	L	S	V	G	D	T	P	A	M	S	A	G	S	L	E	C	A	S
Query Conservation
Alig confidence							.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	F	W	E	P	.	.	G	N	Y	K	R	T	T	K	R	I	E	D	G	Y	K	L	C	N	D	L	Q	Q	L	I	Q	E	R	A	D	I	E	K	G	Y	A	K	S	L	R	T	W	S	K	K	W	G	E	L	I	E	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	E	Y	G	T	T
Template Known Secondary structure			T	T	S	T	.	.	T	T	T																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure							.	.																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.																.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.								.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.
Query Sequence		L	T	T	W	S	K	I	L	D	E	L	T	R	S	S	K	T	H	Q	K	L	S	D	D	Y	S	L	D	I	A	E	K	L	K	K	L	E	S	H	I	E	.	.	.	.	.	.	.	A	L	R	K	V	Y	D	D	L	Y	K	K	F	S	S	E	K	E	T	L	L	N	S	V	K	R	A	K	V	S	Y	H
Query Conservation																																											.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	A	W	K	G	V	L	T	E	S	E	R	I	S	D	V	H	X	K	I	K	D	N	L	C	N	D	V	N	S	Q	I	K	T	W	Q	K	E	N	Y	H	H	T	L	X	Q	I	K	E	R	K	D	L	E	D	L	F	K	K	A	Q	K	P	W	A	K	L	L	A	K	V	E	K	A	K	A	D	Y	H
Template Known Secondary structure																													T																	T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.										.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	C	D	D	L	E	S	A	R	Q	K	N	D	K	.	.	.	.	.	.	.	.	.	Y	R	E	Q	K	T	Q	R	N	L	K	L	S	E	S	D	M	L	D	K	K	N	K	Y	L	L	R	M	L	V	Y	N	A	H	K	Q	K	F	Y	N	E	T	L	P	T	L	L	N	H	M	Q	V	L	N	E	Y
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.																																										.
Template Conservation																																																																			.
Template Sequence		S	A	C	K	T	E	R	S	A	T	N	Q	E	R	N	A	N	A	D	S	S	L	S	P	D	Q	V	K	K	X	H	D	R	V	Q	K	T	K	D	Q	V	Q	K	C	R	E	K	Y	E	Q	A	I	A	E	I	T	K	Y	N	S	V	Y	I	E	D	.	X	T	S	V	F	E	K	C	Q	T	F	E	K	T
Template Known Secondary structure																T	T	T	T		T	T	S																																												.
Template Predicted Secondary structure																																																																			.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		R	V	S	N	L	N	E	I	W	C	N	S	F	S	I	E	K	S	L	H	.	D	T	L	S	Q	R	T	V	E	I	Q	S	E	I	A	K	N	E	P	V	L	D	S	A	M	F	G	R	H	N	S	K	N
Query Conservation																						.
Alig confidence																						.
Template Conservation
Template Sequence		R	L	Q	F	F	K	E	I	L	F	N	V	H	S	C	L	D	L	T	K	V	Q	S	L	P	Q	I	Y	E	E	F	S	H	T	I	N	N	A	D	Q	Q	K	D	L	K	W	W	S	N	N	H	G	I	N
Template Known Secondary structure																			G	G	G		S															T															S	T	T
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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