Job Description Q09746 Confidence 67.94% Date Sun Jul 8 11:56:56 BST 2012 Rank 252 Aligned Residues 232 % Identity 12% Template c2q13A_ PDB info PDB header:protein transport Chain: A: PDB Molecule:dcc-interacting protein 13 alpha; PDBTitle: crystal structure of bar-ph domain of appl1 Resolution 2.05 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	E	T	Y	K	F	S	D	E	L	H	D	D	F	K	V	V	D	S	W	I	N	N	G	A	K	W	L	E	D	I	Q	L	Y	Y	K	E	R	S	S	I	E	K	E	Y	A	Q	K	L	A	S	L	S	N	K	Y	G	E	K	K	S	R	K	S	S	A	L	S	V	G	D	T	P	A	M	S	A	G	S
Query Conservation
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	P	Q	T	R	S	L	L	G	V	F	E	E	D	A	T	A	I	S	N	Y	M	N	Q	L	Y	Q	A	M	H	R	I	Y	D	A	Q	N	E	L	S	A	A	T	H	L	T	S	K	L	L	K	E	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	R	F	P
Template Known Secondary structure																																																					T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.																						70	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	C	A	S	L	T	T	W	S	K	I	L	D	E	L	T	R	S	S	K	T	H	Q	K	L	S	D	D	Y	S	L	D	I	A	E	K	L	K	K	L	E	S	H	I	E	A	L	R	K	V	Y	D	D	L	Y	K	K	F	S	S	E	K	E	T	L	L	N	S	V	K	R	A	K	V	S	Y	H	E	A
Query Conservation
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	E	V	M	S	S	T	L	Q	Q	F	S	K	V	I	D	E	L	S	S	C	H	A	V	L	S	T	Q	L	A	D	A	M	M	F	P	I	T	Q	F	K	E	R	D	L	K	E	I	L	T	L	K	E	V	F	Q	I	A	S	N	D	H	D	A	A	I	N	R	Y	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																																			T										T																											.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	D	D	L	E	S	A	R	Q	K	N	D	K	Y	R	E	Q	K	T	Q	R	N	L	K	L	S	E	S	D	M	L	D	K	K	N	K	Y	L	L	R	M	L	V	Y	N	A	H	K	Q	K	F	Y	N	E	T	L	P	T	L	L	N	H	M	Q	V	L	N	E	Y	R	V	S	N	L	N	E	I	W	C	N
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	S	R	L	S	K	K	R	E	N	D	K	V	K	Y	E	V	T	E	D	V	Y	T	S	R	K	K	Q	H	Q	T	M	M	H	Y	F	C	A	L	N	T	L	Q	Y	K	K	K	I	A	L	L	E	P	L	L	G	Y	M	Q	A	Q	I	S	F	F	K	M	G	S	E	N	L	N	E	Q	L	E	E
Template Known Secondary structure		.	.	.		T			S	S	S																																																																S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	S	I	E	K	S	L	H	D	T	L	S	Q	R	T	V	E	I	Q	S	E	I	A	K	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	A	N	I	G	T	S	V	Q	N	V	R	R	E	M	D	S	D	I	E	T	M	Q	Q	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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