Job Description Q09746 Confidence 88.35% Date Sun Jul 8 11:56:56 BST 2012 Rank 247 Aligned Residues 351 % Identity 10% Template c1ciiA_ PDB info PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Resolution 3.00 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	S	I	E	K	E	Y	A	Q	K	L	A	S	L	S	N	K	Y	G	E	K	K	S	R	K	S	S	A	L	S	V	G	D	T	P	A	M	S	A	G	S	L	E	C	A	S	L	T	T	W	S	K	I	L	D	E	L	T	R	S	S	K	T	H	Q	K	L	S	D	D	Y	S	L	D	I	A	E	K	L
Query Conservation
Alig confidence							.																																																																							.
Template Conservation							.																																																																							.
Template Sequence		R	S	D	I	E	.	K	R	D	K	E	I	T	A	Y	K	N	T	L	S	A	Q	Q	K	E	N	E	N	K	R	T	E	A	G	K	R	L	S	A	A	I	A	A	R	E	K	D	E	N	T	L	K	T	L	R	A	G	N	A	D	A	A	D	I	T	R	Q	E	F	R	L	L	Q	A	E	L	.	R	E	Y
Template Known Secondary structure							.																																																			T	T																			.
Template Predicted Secondary structure							.																																																																							.
Template SS confidence
		67	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	K	L	E	S	H	I	E	A	L	R	K	V	Y	D	D	L	Y	K	K	F	S	S	E	K	E	T	L	L	N	S	V	K	R	A	K	V	S	Y	H	E	A	C	D	D	L	E	S	A	R	Q	K	N	D	K	Y	R	E	Q	K	T	Q	R	N	L	K	L	S	E	S	D	M	L	D	K	K	N	K	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	R	T	E	I	A	G	Y	D	A	L	R	L	H	T	E	S	R	M	L	F	A	D	A	D	S	L	R	I	S	P	R	E	A	R	S	L	I	E	Q	A	E	K	R	Q	K	D	A	Q	N	A	D	K	K	A	A	D	M	L	A	E	Y	E	R	R	K	G	I	L	D	T	R	L	S	E	L	E	K	N
Template Known Secondary structure																										T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		L	R	M	L	V	Y	N	A	H	K	Q	K	F	Y	N	E	T	L	P	T	L	L	N	H	M	Q	V	L	N	E	Y	R	V	S	N	L	N	E	I	W	C	N	S	F	S	I	E	K	S	L	H	D	T	L	S	Q	R	T	V	E	I	Q	S	E	I	A	K	N	E	P	V	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	A	A	L	A	V	L	D	A	Q	Q	A	R	L	L	G	Q	Q	T	R	N	D	R	A	I	S	E	A	R	N	K	L	S	S	V	T	E	S	L	N	T	A	R	N	A	L	T	R	A	E	Q	Q	L	T	Q	Q	K	N	T	P	D	G	K	T	I	V	S	P	E	K	F	P	G	R	S	S	T	N	D
Template Known Secondary structure																																																												S	S									T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
																														271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	S	A	M	F	G	R	H	N	S	K	N	W	A	L	P	A	D	L	H	F	E	P	S	P	I	W	H	D	T	D	A	L	V	V	D	G	S	C	K	N	Y	L	R	N	L	L	V	H	S	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	V	V	S	G	D	P	R	F	A	G	T	I	K	I	T	T	S	A	V	I	D	N	R	A	N	L	N	Y	L	L	S	H	S	G	L	D	Y	K	R	N	I	L	N	D	R	N	P	V	V	T	E	D	V	E	G	D	K	K	I	Y	N	A	E	V	A	E	W	D	K	L	R	Q	R	L	L	D	A	R
Template Known Secondary structure							S		T	T	T		S																					T	S									T	S					S			S	S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	L	G	K	Q	K	G	E	L	V	S	L	D	S	Q	L	E	G	L	R	V	D	D	P	N	S	A	N	Q	S	F	E	S	K	K	A	S	I	N	L	E	G	K	E	L	M	V	K	A	R	I	E	D	L	E	V	R	I	N	K	I	T	S	V	A	N	N	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	I	T	S	A	E	S	A	V	N	S	A	R	N	N	L	S	A	R	T	N	E	Q	K	H	A	N	D	A	L	N	A	L	L	K	E	K	E	N	I	R	N	Q	L	S	G	I	N	Q	K	I	A	E	E	K	R	K	Q	D	E	L	K	A	T	K	D	A	I	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions