Job Description A6X982 Confidence 3.38% Date Sun Jul 8 11:45:03 BST 2012 Rank 69 Aligned Residues 46 % Identity 15% Template c3dshA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:interferon regulatory factor 5; PDBTitle: crystal structure of dimeric interferon regulatory factor 5 (irf-5)2 transactivation domain Resolution 2.00 Å

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		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	K	N	D	E	D	V	L	K	C	M	D	F	L	Y	N	K	E	D	E	I	R	K	S	Y	G	E	K	K	I	T	I	D	L	K	G	T	S	F	F	G	K	S	P	Q	E	A	K	V	L	Y	A	T	P
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.
Template Sequence		D	I	P	S	D	K	Q	R	F	Y	T	N	Q	L	L	D	V	L	.	.	.	.	.	.	.	.	.	D	R	G	L	I	L	Q	L	Q	G	Q	D	L	Y	A	I	R	L	C	Q	C	K	V	F	W	S	G	P
Template Known Secondary structure		T															T	T		.	.	.	.	.	.	.	.	.	S	S								T	T								S	S	S						S	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.										.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions