Job Description A6X982 Confidence 100.00% Date Sun Jul 8 11:45:03 BST 2012 Rank 2 Aligned Residues 177 % Identity 18% Template c1vdxA_ PDB info PDB header:ligase Chain: A: PDB Molecule:hypothetical protein ph0099; PDBTitle: crystal structure of a pyrococcus horikoshii protein with2 similarities to 2'5' rna-ligase Resolution 2.40 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	L	A	L	P	I	S	E	H	Y	I	E	E	S	L	K	Y	F	K	L	T	S	N	D	P	M	I	L	S	G	F	R	G	P	R	V	S	H	L	T	I	G	M	I	P	V	K	N	D	E	D	V	L	K	C	M	D	F	L	Y	N	K	E	D	E	I	R	K	S	Y	G	E	K	K	I	T	I	D	L
Query Conservation
Alig confidence									.																																																												.	.	.	.	.	.
Template Conservation									.																																																												.	.	.	.	.	.
Template Sequence		A	F	I	A	I	D	V	.	N	E	S	V	R	D	S	L	V	R	A	Q	D	Y	I	G	S	K	E	A	K	I	K	F	V	E	R	E	N	L	H	I	T	L	K	F	L	G	E	I	T	E	E	Q	A	E	E	I	K	N	I	L	K	K	I	A	E	K	Y	.	.	.	.	.	.	K	K	H	E	V	K	V
Template Known Secondary structure									.																	S	S	S								G	G	G																												T	T	S	.	.	.	.	.	.	B
Template Predicted Secondary structure									.																																																												.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.							.	70	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		K	G	T	S	F	F	G	K	S	P	Q	E	A	K	V	L	Y	A	T	P	.	.	.	.	.	V	D	K	H	N	E	W	L	K	V	I	F	T	E	H	N	L	F	T	K	D	A	R	P	L	T	L	H	C	T	L	L	N	S	R	Y	I	K	Y	Q	G	R	R	I	R	F	F	N	S	E	P	F	M	E	K
Query Conservation																						.	.	.	.	.
Alig confidence									.													.	.	.	.	.																		.	.																								.	.	.	.	.	.
Template Conservation									.																																			.	.																								.	.	.	.	.	.
Template Sequence		K	G	I	G	V	F	P	.	N	P	N	Y	I	R	V	I	W	A	G	I	E	N	D	E	I	I	R	E	M	A	R	E	I	E	D	E	L	A	K	L	G	F	.	.	K	K	E	G	N	F	V	A	H	I	T	L	G	R	V	K	F	V	K	D	K	L	G	.	.	.	.	.	.	L	T	M	K	L	K	E
Template Known Secondary structure									.		S	S	S																											T	T	T		.	.				S	S														S					.	.	.	.	.	.							T
Template Predicted Secondary structure									.																																			.	.																								.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	G	Q	F	L	W	A	H	N	I	E	L	D	K	L	S	I	M	K	T	G	A	V	G	E	P	G	N	M	Y	Y	E	E	L	A	S	I	P	L	L	V
Query Conservation
Alig confidence										.											.	.
Template Conservation										.											.	.
Template Sequence		L	A	N	E	D	F	G	S	.	F	V	V	D	A	I	E	L	K	K	.	.	S	T	L	T	P	K	G	P	I	Y	E	T	L	A	R	F	E	L	S	E
Template Known Secondary structure		T	T	T						.											.	.					T	T													B
Template Predicted Secondary structure										.											.	.
Template SS confidence
		147	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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