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Job Description | C6Y4C1 | Confidence | 5.76% | Date | Sun Jul 8 11:45:08 BST 2012 |
Rank | 21 | Aligned Residues | 43 |
% Identity | 0% | Template | c1envA_ |
PDB info |
PDB header:viral protein | Chain: A: PDB Molecule:hiv-1 envelope protein chimera consisting of a fragment of |
PDBTitle: atomic structure of the ectodomain from hiv-1 gp41
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Resolution | 2.60 Å |
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17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
V | Y | M | V | Y | F | V | H | N | N | Q | I | I | E | R | E | K | M | S | A | G | V | Q | K | D | D | E | R | K | R | I | K | K | E | R | F | E | D | L | K | R | Q | Q |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | A | V | E | R | Y | L | K | W | M | E | W | D | R | E | I | N | N | Y | T | S | L | I | H | S | L | I | E | E | S | Q | N | Q | Q | E | K | N | E | Q | E | L | L | E |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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