Job Description P40996 Confidence 96.84% Date Sun Jul 8 11:55:18 BST 2012 Rank 249 Aligned Residues 73 % Identity 16% Template c2ktrA_ PDB info PDB header:signaling protein, transport protein Chain: A: PDB Molecule:sequestosome-1; PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs Resolution UNK

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		459	460	.	.	.	.	.	.	.	.	.				470	.	.	.	.				.												.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.				.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.						.	.	.		.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Query SS confidence													.	.	.						.	.	.		.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Query Sequence		T	C	K	V	K	V	R	L	G	D	E	.	.	.	T	F	A	L	R	.	.	.	V	.	.	.	.	.	.	.	.	.	.	.	P	S	D	I	S	F	E	D	F	C	E	R	L	T	N	K	L	G	.	.	.	E	C	E	H	L	S	Y	R	D	T	N	A	N	K	V	L	P	L	N	N	V	D	D	L	R
Query Conservation													.	.	.						.	.	.		.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Alig confidence													.	.	.						.	.	.		.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation
Template Sequence		S	L	T	V	K	A	Y	L	L	G	K	E	E	A	A	R	E	I	R	R	F	S	F	C	F	S	P	E	P	E	A	E	A	A	A	G	P	G	P	S	E	R	L	L	S	R	V	A	V	L	F	P	A	L	R	P	G	G	F	Q	A	H	Y	R	A	E	R	G	D	L	V	A	F	S	S	D	E	E	L	T
Template Known Secondary structure												S	S	S												S	S	S		S		S	S	S			S																T	T	S		S	S									T	T								S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		519	520	.	.	.	.	.	.	.	.	.	530	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	C	S	Q	E	S	G	V	L	L	F	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	M	S	Y	V	K	D	D	I	F	R	I
Template Known Secondary structure									S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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