Job Description P40996 Confidence 99.04% Date Sun Jul 8 11:55:18 BST 2012 Rank 227 Aligned Residues 93 % Identity 24% Template c2i4kA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:sorting nexin-1; PDBTitle: solution structure of the px domain of sorting nexin 1 Resolution UNK

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		311	.	.	.		.	.	.	.	.	320	.	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370													.	.	.
Predicted Secondary structure						.									.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.									.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	Q	Y	W	.	Y	L	V	R	A	V	M	S	.	.	.	.	D	G	K	H	R	N	L	C	R	Y	Y	E	D	F	F	N	F	Q	T	K	F	L	E	L	F	P	N	E	A	G	R	G	D	E	R	R	V	I	P	Y	M	P	G	P	V	D	D	V	.	.	.	.	.	.	.	.	.	.	.	.	N	E	L
Query Conservation						.									.	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.									.	.	.	.																															.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.
Template Sequence		N	A	Y	V	A	Y	K	V	T	T	Q	T	S	L	P	L	F	R	S	K	Q	F	A	V	K	R	R	F	S	D	F	L	G	L	Y	E	K	L	S	E	K	H	S	Q	N	G	F	.	.	.	.	.	.	I	V	P	P	P	P	E	K	S	L	I	G	M	T	K	V	K	V	G	K	E	D	S	S	S	A	E
Template Known Secondary structure					B				B						S	S	S	S		S	S				B																	T		S	S	S	S		.	.	.	.	.	.				S	S	S	S			S	S	S	S	S	S					S				S	S	T	T
Template Predicted Secondary structure																																																	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.							.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	S	Q	R	A	M	D	L	D	V	Y	L	K	E	M	C	R	L	P	A	R	L	L	E	N	E	L	V	K	L	F	F	L	P	L	D
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		F	L	E	K	R	R	A	A	L	E	R	Y	L	Q	R	I	V	N	H	P	T	.	M	L	Q	D	P	D	V	R	E	F	L	E	K	E	E
Template Known Secondary structure																							.				S					T	T	T	T
Template Predicted Secondary structure																							.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions