Job Description P40996 Confidence 99.95% Date Sun Jul 8 11:55:18 BST 2012 Rank 6 Aligned Residues 225 % Identity 18% Template c2dybA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:neutrophil cytosol factor 4; PDBTitle: the crystal structure of human p40(phox) Resolution 3.15 Å

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		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.				.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		S	S	E	P	T	V	V	A	A	M	V	E	N	Y	M	I	R	D	D	.	.	.	Q	Y	W	Y	L	V	R	A	V	M	S	D	G	K	H	R	N	L	C	R	Y	Y	E	D	F	F	N	F	Q	T	K	F	L	E	L	F	P	N	E	A	G	R	G	D	E	R	R	V	I	P	Y	M	P	G	P	V	D	D
Query Conservation																					.	.	.
Alig confidence																					.	.	.																																						.	.	.	.	.	.	.	.	.	.
Template Conservation																																																													.	.	.	.	.	.	.	.	.	.
Template Sequence		L	P	D	D	V	A	I	S	A	N	I	A	D	I	E	E	K	R	G	F	T	S	H	F	V	F	V	I	E	V	K	T	K	G	G	S	K	Y	L	I	Y	R	R	Y	R	Q	F	H	A	L	Q	S	K	L	E	E	R	F	G	.	.	.	.	.	.	.	.	.	.	T	L	P	T	L	P	A	K	V	Y	V
Template Known Secondary structure		S		T	T	S														S	S	S												T	T	S																							T		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.											.	.	.	.	.	80	.	.	.	.	.
		370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.		.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure					.																																																														.
Query SS confidence					.																																																														.
Query Sequence		V	N	E	.	L	I	S	S	Q	R	A	M	D	L	D	V	Y	L	K	E	M	C	R	L	P	A	R	L	L	E	N	E	L	V	K	L	F	F	L	P	L	D	G	D	V	E	S	P	H	P	T	S	T	M	P	E	A	L	P	R	E	P	L	S	F	.	S	L	P	E	K	A	P	E	K	A	T	N	I	S
Query Conservation					.																																																														.
Alig confidence					.																																																														.
Template Conservation
Template Sequence		G	V	K	Q	E	I	A	E	M	R	I	P	A	L	N	A	Y	M	K	S	L	L	S	L	P	V	W	V	L	M	D	E	D	V	R	I	F	F	Y	Q	S	P	Y	D	S	E	Q	V	P	Q	A	L	R	R	L	R	P	R	R	M	A	A	P	R	A	E	A	L	F	D	F	T	G	N	S	K	L	E	L	N
Template Known Secondary structure		S																							S						T									S																	S												S	S		B			S	S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
																							448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.																			.	.	.	.	470	.	.	.	.	.	.	.	.	.					480	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	E	S	A	P	T	T	A	G	S	T	C	K	V	K	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	D	E	T	F	A	L	R	V	P	S	D	I	.	.	.	.	S	F	E	D	F
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.	.
Template Conservation
Template Sequence		F	K	A	G	D	V	I	F	L	L	S	R	I	N	K	D	W	L	E	G	T	V	R	G	A	T	G	I	F	P	L	S	F	V	K	I	L	K	D	F	P	E	E	D	D	P	T	N	W	L	R	C	Y	Y	Y	E	D	T	I	S	T	I	K	D	I	A	V	E	E	D	L	S	S	T	P	L	L	K	D	L
Template Known Secondary structure		B		T	T										S	S	S							T	T							G	G	G										T	T													S	S											S		T	T
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		485	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	E	R	L	T	N	K	L	G	E	C	E	H	L	S	Y	R	D	T	N	A	N	K	V	L	P	L	N	N	V	D	D	L	R	K	A	C	S	Q	E	S	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	L	T	R	R	E	F	Q	R	E	D	I	A	L	N	Y	R	D	A	E	G	D	L	V	R	L	L	S	D	E	D	V	A	L	M	V	R	Q	A	R	G	L
Template Known Secondary structure										T		S									S	S	S							S												T	T	S
Template Predicted Secondary structure
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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