Return to main results Retrieve Phyre Job Id

Job DescriptionP40996
Confidence25.46%DateSun Jul 8 11:55:18 BST 2012
Rank345Aligned Residues46
% Identity22%Templatec1ttnA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:dendritic cell-derived ubiquitin-like protein; PDBTitle: solution structure of the ubiquitin-like domain of human dc-2 ubp from dendritic cells
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   457..460...... ...470.........480.........490... ......500..
Predicted Secondary structure 


.









..

Query SS confidence 









.


























. .








Query Sequence  GSTCKVKVRL. GDETFALRVPSDISFEDFCERLTNKLG. . ECEHLSYRD
Query Conservation      


   . 

  
 
  
      
      

 ..         
Alig confidence 









.


























..








Template Conservation       
 

   

   
 
    

  

  
    

    
 
   
Template Sequence  GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFS
Template Known Secondary structure 

STTT
TTSTT


STT
T
Template Predicted Secondary structure 














Template SS confidence 
















































   21........30.........40.........50.........60.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions