Job Description C6Y4C0 Confidence 97.90% Date Sun Jul 8 11:45:08 BST 2012 Rank 219 Aligned Residues 80 % Identity 16% Template d1uw4a_ SCOP info Ferredoxin-like RNA-binding domain, RBD Smg-4/UPF3 Resolution 1.95

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Show / Hide Conservation and Alignment quality

		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.						.	.	.	.
Predicted Secondary structure																																						.								.	.																										.	.	.	.	.
Query SS confidence																																						.								.	.																										.	.	.	.	.
Query Sequence		H	T	L	Y	I	R	N	F	G	T	D	M	R	A	R	T	L	G	Q	A	F	E	K	W	G	R	I	V	R	C	D	I	P	I	S	S	.	N	P	Q	A	H	R	Y	.	.	A	F	V	E	F	E	E	R	E	K	A	E	L	A	H	E	K	M	R	N	A	K	I	G	N	.	.	.	.	.	D	I	I	F
Query Conservation																																						.								.	.																										.	.	.	.	.
Alig confidence																																						.								.	.																										.	.	.	.	.
Template Conservation
Template Sequence		S	K	V	V	I	R	R	L	P	P	T	L	T	K	E	Q	L	Q	E	H	L	Q	P	M	P	E	H	D	Y	F	E	F	F	S	N	D	T	S	L	Y	P	H	M	Y	A	R	A	Y	I	N	F	K	N	Q	E	D	I	I	L	F	R	D	R	F	D	G	Y	V	F	L	D	N	K	G	Q	E	Y	P	A	I
Template Known Secondary structure											T	T												S												S			S	S	T	T											S	S	S											T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	W	A	K	S	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	E	F	A	P	F	Q	K
Template Known Secondary structure						S	S
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions