Job Description C6Y4C0 Confidence 99.80% Date Sun Jul 8 11:45:08 BST 2012 Rank 32 Aligned Residues 80 % Identity 23% Template c3sdeB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:non-pou domain-containing octamer-binding protein; PDBTitle: crystal structure of a paraspeckle-protein heterodimer, pspc1/nono Resolution 1.90 Å

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		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	K	P	G	H	T	L	Y	I	R	N	F	G	T	D	M	R	A	R	T	L	G	Q	A	F	E	K	W	G	R	I	V	R	C	D	I	P	I	S	S	N	P	Q	A	H	R	Y	A	F	V	E	F	E	E	R	E	K	A	E	L	A	H	E	K	M	R	N	A	K	I	G	N	D	I	I	F	V	E	W
Query Conservation
Alig confidence																																							.	.	.	.	.
Template Conservation																																							.	.	.	.	.
Template Sequence		T	F	T	Q	R	S	R	L	F	V	G	N	L	P	P	D	I	T	E	E	E	M	R	K	L	F	E	K	Y	G	K	A	G	E	V	F	I	.	.	.	.	.	H	K	D	K	G	F	G	F	I	R	L	E	T	R	T	L	A	E	I	A	K	V	E	L	D	N	M	P	L	R	G	K	Q	L	R	V	R	F
Template Known Secondary structure		S	S		G	G	G						S			T	T											G	G	G	S								.	.	.	.	.		T	T	T	T							S	S												T	T				T	T
Template Predicted Secondary structure																																							.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.						.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		93	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	S	R	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	C	H	S	A
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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