Job Description C6Y4C0 Confidence 99.75% Date Sun Jul 8 11:45:08 BST 2012 Rank 99 Aligned Residues 88 % Identity 16% Template c3q2tC_ PDB info PDB header:rna binding protein/rna Chain: C: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6; PDBTitle: crystal structure of cfim68 rrm/cfim25/rna complex Resolution 3.06 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																										.	.												.
Query SS confidence																										.	.												.
Query Sequence		T	L	Y	I	R	N	F	G	T	D	M	R	A	R	T	L	G	Q	A	F	E	K	W	G	.	.	R	I	V	R	C	D	I	P	I	S	S	.	N	P	Q	A	H	R	Y	A	F	V	E	F	E	E	R	E	K	A	E	L	A	H	E	K	M	R	N	A	K	I	G	N	D	I	I	F	V	E	W	A	K	S
Query Conservation																										.	.												.
Alig confidence																										.	.												.
Template Conservation
Template Sequence		A	L	Y	I	G	N	L	T	W	W	T	T	D	E	D	L	T	E	A	V	H	S	L	G	V	N	D	I	L	E	I	K	F	F	E	N	R	A	N	G	Q	S	K	G	F	A	L	V	G	V	G	S	E	A	S	S	K	K	L	M	D	L	L	P	K	R	E	L	H	G	Q	N	P	V	V	T	P	V	N	K
Template Known Secondary structure							S			T	T											G	G	G	T													T	T	T												S	S	S	S									S	T	T	S		B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		96	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	R	Y	H	R	D	D	K	R	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	F	L	S	Q	F	E	M	Q	S	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions