Job Description C6Y4C0 Confidence 99.61% Date Sun Jul 8 11:45:08 BST 2012 Rank 195 Aligned Residues 79 % Identity 14% Template c3ns5B_ PDB info PDB header:translation Chain: B: PDB Molecule:eukaryotic translation initiation factor 3 subunit b; PDBTitle: crystal structure of the rna recognition motif of yeast eif3b residues2 76-161 Resolution 2.60 Å

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		17	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																												.
Query SS confidence												.	.	.	.	.	.																												.
Query Sequence		G	H	T	L	Y	I	R	N	F	G	.	.	.	.	.	.	T	D	M	R	A	R	T	L	G	Q	A	F	E	K	W	G	R	I	V	R	C	D	I	P	I	S	S	.	N	P	Q	A	H	R	Y	A	F	V	E	F	E	E	R	E	K	A	E	L	A	H	E	K	M	R	N	A	K	I	G	N	D	I	I	F
Query Conservation												.	.	.	.	.	.																												.
Alig confidence												.	.	.	.	.	.																												.
Template Conservation
Template Sequence		D	Q	Y	I	V	V	N	G	A	P	V	I	P	S	A	K	V	P	V	L	K	K	A	L	T	S	L	F	S	K	A	G	K	V	V	N	M	E	F	P	I	D	E	A	T	G	K	T	K	G	F	L	F	V	E	C	G	S	M	N	D	A	K	K	I	I	K	S	F	H	G	K	R	L	D	L	K	H	R	L
Template Known Secondary structure		S							S					B	G	G	G													T	T	T	S											T	T	T	T				S							S	S												T	T		B	S	S	S	S		B
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		90	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	W	A	K	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	L	Y	T	M	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions