Job Description C6Y4C0 Confidence 99.71% Date Sun Jul 8 11:45:08 BST 2012 Rank 167 Aligned Residues 90 % Identity 21% Template c2dhsA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:cug triplet repeat rna-binding protein 1; PDBTitle: solution structure of nucleic acid binding protein cugbp1ab2 and its binding study with dna and rna Resolution UNK

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	S	N	T	P	T	G	F	N	Y	K	P	G	H	T	L	Y	I	R	N	F	G	T	D	M	R	A	R	T	L	G	Q	A	F	E	K	W	G	R	I	V	R	C	D	I	P	I	S	S	N	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	L	D	H	P	D	Q	P	D	L	D	A	I	K	M	F	V	G	Q	V	P	R	T	W	S	E	K	D	L	R	E	L	F	E	Q	Y	G	A	V	Y	E	I	N	V	L	R	D	R	S	Q	N	P	P	Q	S	K	G	C	C	F	V	T	F	Y	T	R	K	A	A	L	E	A	Q	N	A	L	H	N	M
Template Known Secondary structure					S		S	S						S							S					S											T	T	S										S	T	T		S	S	S											S												S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
																																																																		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	H	R	Y	A	F	V	E	F	E	E	R	E	K	A	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	L	P	G	M	H	H	P	I	Q	M	K	P	A	D	S	E	K	N	N	A	V	E	D	R	K	L	F	I	G	M	I	S	K	K	C	T	E	N	D	I	R	V	M	F	S	S	F	G	Q	I	E	E	C	R	I	L	R	G	P	D	G	L	S	R	G	C	A	F	V	T	F	T	T	R	A	M	A	Q
Template Known Secondary structure							S	S									G	G	G		S		G	G	G	G	S									T	T												T	T	S											T	T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		73	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		L	A	H	E	K	M	R	N	A	K	I	.	.	.	G	N	D	I	I	F	V	E	W	A	K
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		T	A	I	K	A	M	H	Q	A	Q	T	M	E	G	C	S	S	P	M	V	V	K	F	A	D
Template Known Secondary structure								T	T	T			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions