Return to main results Retrieve Phyre Job Id

Job DescriptionC6Y4C0
Confidence99.71%DateSun Jul 8 11:45:08 BST 2012
Rank168Aligned Residues96
% Identity18%Templatec2db1A_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein f; PDBTitle: solution structure of the rna binding domain in2 heterogeneous nuclear ribonucleoprotein f homolog
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.... .....50.........60.........70........
Predicted Secondary structure 



























...

















Query SS confidence 










































. . .

































Query Sequence  SNAPSNTPTGFNYKPGHTLYIRNFGTDMRARTLGQAFEKWGRI. . . VRCDIPISSNPQAHRYAFVEFEEREKAELAHEKM
Query Conservation 
  
   
          
 
 

        
   
   
 
...    
           


 
     
  

   
Alig confidence 










































...































.
Template Conservation                    
 
 


   

 

   
        
  
       
   
 




     
  

 . 
Template Sequence  SSGSSGMMLGPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK. K
Template Known Secondary structure 

S


B
SSS
B



S

TT

TTTS
BTTGGGG
SSS
BSSGG.G
Template Predicted Secondary structure 





































.
Template SS confidence 















































































  
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions