Job Description C6Y4C0 Confidence 99.46% Date Sun Jul 8 11:45:08 BST 2012 Rank 212 Aligned Residues 76 % Identity 17% Template c2d9oA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:dnaj (hsp40) homolog, subfamily c, member 17; PDBTitle: solution structure of rna binding domain in hypothetical2 protein flj10634 Resolution UNK

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		17	.	.	20	.	.	.								.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.
Query Sequence		G	H	T	L	Y	I	R	.	.	.	.	.	.	.	N	F	G	T	D	M	R	A	R	T	L	G	Q	A	F	E	K	W	G	R	I	V	R	C	D	I	P	I	S	S	N	P	Q	A	H	R	Y	A	F	V	E	F	E	E	R	E	K	A	E	L	A	H	E	K	M	R	N	A	K	I	G	N	D	I	I	F
Query Conservation									.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.																															.	.	.	.																								.	.
Template Conservation																																														.	.	.	.																								.	.
Template Sequence		T	P	K	L	K	L	K	W	K	C	K	K	E	D	E	S	K	G	G	Y	S	K	D	V	L	L	R	L	L	Q	K	Y	G	E	V	L	N	L	V	L	S	S	K	K	.	.	.	.	P	G	T	A	V	V	E	F	A	T	V	K	A	A	E	L	A	V	Q	N	E	V	G	.	.	L	V	D	N	P	L	K
Template Known Secondary structure		S											S	S		S				S												T	T	S									S	S	S	.	.	.	.	S	S							S											T			B	.	.		S	S	S	B
Template Predicted Secondary structure																																														.	.	.	.																								.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.					.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.
		90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	W	A	K	S	R	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	W	L	E	G	Q	P	Q
Template Known Secondary structure					S	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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