Job Description O74749 Confidence 94.62% Date Sun Jul 8 11:51:36 BST 2012 Rank 249 Aligned Residues 110 % Identity 11% Template c3d9oB_ PDB info PDB header:transcription Chain: B: PDB Molecule:rna-binding protein 16; PDBTitle: snapshots of the rna processing factor scaf8 bound to different2 phosphorylated forms of the carboxy-terminal domain of rna-polymerase3 ii Resolution 2.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.
Predicted Secondary structure																																																																														.	.
Query SS confidence																																																																														.	.
Query Sequence		I	E	T	L	I	L	Q	A	T	D	E	K	N	T	K	E	K	W	D	V	I	M	D	A	C	D	Q	L	S	S	T	S	G	D	V	G	R	N	S	I	K	F	L	N	K	R	L	D	T	A	N	A	N	I	Q	L	L	A	L	T	L	T	D	A	I	V	K	N	C	K	T	S	I	V	R	E	.	.	I	S
Query Conservation																																																																														.	.
Alig confidence												.																						.																																												.	.
Template Conservation												.																						.
Template Sequence		F	N	S	E	L	Y	S	L	X	D	.	X	K	P	P	I	S	K	A	K	X	T	Q	I	T	K	A	A	I	K	A	I	.	K	F	Y	K	H	V	V	Q	S	V	E	K	F	I	Q	K	C	K	P	E	Y	K	V	P	G	L	Y	V	I	D	S	I	V	R	Q	S	R	H	Q	F	G	Q	E	K	D	V	F
Template Known Secondary structure								G	G	G	G	.	S		S	S																T	G	.	G	G															S		G	G	G																					T	T	T		S
Template Predicted Secondary structure												.																						.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.		.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		S	R	T	F	T	D	S	L	L	K	I	A	S	D	S	T	.	T	H	N	R	V	R	S	R	I	A	V	L	V	N	E	W	A	E
Query Conservation																		.
Alig confidence																		.
Template Conservation
Template Sequence		A	P	R	F	S	N	N	I	I	S	T	F	Q	N	L	Y	R	C	P	G	D	D	K	S	K	I	V	R	V	L	N	L	W	Q	K
Template Known Secondary structure								T									T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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