Job Description O74749 Confidence 95.70% Date Sun Jul 8 11:51:36 BST 2012 Rank 245 Aligned Residues 110 % Identity 14% Template c3cljA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:protein nrd1; PDBTitle: structure of the rna polymerase ii ctd-interacting domain of nrd1 Resolution 2.10 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		I	E	T	L	I	L	Q	A	T	D	E	K	N	T	K	E	K	W	D	V	I	M	D	A	C	D	Q	L	S	S	T	S	G	D	V	G	R	N	S	I	K	F	L	N	K	R	L	D	T	A	N	A	N	I	Q	L	L	A	L	T	L	T	D	A	I	V	K	N	C	K	T	S	I	V	R	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence														.																				.																																											.	.	.	.	.
Template Conservation														.																				.
Template Sequence		F	V	A	T	L	E	S	F	K	D	L	K	.	S	G	I	S	G	S	R	I	K	K	L	T	T	Y	A	L	D	H	I	.	D	I	E	S	K	I	I	S	L	I	I	D	Y	S	R	L	C	P	D	S	H	K	L	G	S	L	Y	I	I	D	S	I	G	R	A	Y	L	D	E	T	R	S	N	S	N	K	P
Template Known Secondary structure								G	G	G	G		S	.	S	S																T	G	.	G	G															S		G	G	G																					T				S	T
Template Predicted Secondary structure														.																				.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
					84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure		.	.	.																				.	.
Query SS confidence		.	.	.																				.	.
Query Sequence		.	.	.	E	I	S	S	R	T	F	T	D	S	L	L	K	I	A	S	D	S	T	.	.	T	H	N	R	V	R	S	R	I	A	V	L	V	N	E	W	A	E
Query Conservation		.	.	.																				.	.
Alig confidence		.	.	.																				.	.
Template Conservation
Template Sequence		G	T	C	A	H	A	I	N	T	L	G	E	V	I	Q	E	L	L	S	D	A	I	A	K	S	N	Q	D	H	K	E	K	I	R	M	L	L	D	I	W	D	R
Template Known Secondary structure		T	S																							S
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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