Job Description O74749 Confidence 81.11% Date Sun Jul 8 11:51:36 BST 2012 Rank 263 Aligned Residues 108 % Identity 14% Template c2km4A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:regulator of ty1 transposition protein 103; PDBTitle: solution structure of rtt103 ctd interacting domain Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																			.	.																			.	.	.	.
Query SS confidence																																			.	.																			.	.	.	.
Query Sequence		D	V	I	M	D	A	C	D	Q	L	S	S	T	S	G	D	V	G	R	N	S	I	K	F	L	N	K	R	L	D	T	A	N	.	.	A	N	I	Q	L	L	A	L	T	L	T	D	A	I	V	K	N	C	.	.	.	.	K	T	S	I	V	R	E	I	S	S	R	T	F	T	D	S	L	L	K	I	A	S	D
Query Conservation																																			.	.																			.	.	.	.
Alig confidence																.																			.	.																			.	.	.	.											.	.											.
Template Conservation																.																																																					.	.											.
Template Sequence		E	S	I	S	S	A	S	K	W	L	L	L	Q	Y	.	R	D	A	P	K	V	A	E	M	W	K	E	Y	M	L	R	P	S	V	N	T	R	R	K	L	L	G	L	Y	L	M	N	H	V	V	Q	Q	A	K	G	Q	K	I	I	Q	F	Q	D	S	F	G	K	.	.	V	A	A	E	V	L	G	R	I	N	.
Template Known Secondary structure													T		G	.	G	G													T	S	S	S	S																				G	G	G	T											.	.	T										.
Template Predicted Secondary structure																.																																																					.	.											.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	T	H	N	R	V	R	S	R	I	A	V	L	V	N	E	W	A	E	I	M	K	K	D	P	N	M	S	L	M	Q	D	I	C	E	K	I	R	K
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence		Q	E	F	P	R	D	L	K	K	K	L	S	R	V	V	N	I	L	K	E	.	.	R	N	I	F	S	K	Q	V	V	N	D	I	E	R	S	L	A	A
Template Known Secondary structure				S																		.	.		T		S
Template Predicted Secondary structure																						.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions