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Job DescriptionQ9Y7Z8
Confidence100.00%DateSun Jul 8 12:04:58 BST 2012
Rank9Aligned Residues814
% Identity33%Templatec3dtpA_
PDB info PDB header:contractile proteinChain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map
Resolution20.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   31........40.........50.........60.........70.........80.........90.........100.........110
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Query Sequence  VYTSTRKKTVGVDDLTLLSKITDEEINKNLELRFRNGEIYTYIGHVLISVNPFRDLGIYTMDILKSYQGKNRLETSPHVY
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Template Sequence  IQKMNPPKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIY
Template Known Secondary structure 



GGGTT
SBGGG
SS
STGGGTTT

TT


S




SSTT

GGGS
SST
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   75....80.........90.........100.........110.........120.........130.........140.........150....
 
   111........120.........130.........140.........150.........160. ........170.........180....
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Query Sequence  AIAENAYYQMKSYHENQCIIISGESGAGKTEAAKRIMQYITHVSKSVGTEI. . . . . . ERVSEIILATNPLLESFGCAKTL
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Template Sequence  AIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKQGPSFSYGELEKQLLQANPILEAFGNAKTV
Template Known Secondary structure  TTT



SSSSSTTTS

S


TT




STT


TTTTTSS
B

S
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   155....160.........170.........180.........190.........200.........210.........220.........230....
 
   185....190.........200.........210.........220.........230.........240.........250.........260....
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Query Sequence  RNNNSSRHGKYLEMIFNSGGVPVGAKITNYLLEKNRIVNQVRNERNFHIFYQFTKSAPQKYRDTYGIQGPENYVYTSACQ
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Template Sequence  KNDNSSRFGKFIRINFDVTGYIVGANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGH
Template Known Secondary structure  S
TTB




SS









GGG


TT


BTT

TT


TT
SSS

SS
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   265....270.........280.........290.........300.........310.... .....320.........330.........340...
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Query Sequence  CLSVDGISDEKDFQGTMNAMKVIGITEPEQDEIFRMLSIILWLGNIQFQE. GQDGGSVISDKSITEFLGYLIGVPVAAIE
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Template Sequence  V. PIPAQQDDEMFQETLEAMTIMGFTEEEQTSILRVVSSVLQLGNIVFKKERNTDQASMPDNTAAQKVCHLMGINVTDFT
Template Known Secondary structure 
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TT

GGGTTT

TTTTTTTSS



TTTSS


S
TTTS
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   321 ........330.........340.........350.........360.........370.........380.........390.........
 
   344.....350.........360.........370.........380.........390.........400.........410.........420...
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Query Sequence  RALTIRIMQTQHGARRGSVYEVPLNPTQALAVRDALSMAIYNCLFDWIVERVNKALVTSDNSVSNSIGILDIYGFEIFEN
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Template Sequence  RSILTPRIKV. . . . . GRDVVQKAQTKEQADFAIEALAKAKFERLFRWILTRVNKALDAS. . . . . . FLGILDIAGFEIFEI
Template Known Secondary structure  S
B

S.....SS


B



TTTTTTTTTTT

B......







SS
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   400......... 410.........420.........430.........440.........450... ......460........
 
   424.....430.........440.........450.........460...... ...470......... 480.........490.........500.
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Query Sequence  NSFEQLCINYVNEKLQQIFIELTLKTEQEEYVREQIAWTPIKY. FNNKVVCDLIESK. RPPGLFAAMNDAIATAHADSAA
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Template Sequence  NSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPK. . . . A
Template Known Secondary structure 

TTS













SSS

T
SS....
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   475....480.........490.........500.........510.........520.........530.........540......... 550
 
   502.......510. ........520. ........530.........540.........550.........560.........570.....
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Query Sequence  ADSAFAQRLN. FLSSNPHFEQ. . . . . RQNQFIVKHYAGDVTYSITGMTDKNKDQLATDILNLIHSSNNEFMKSIFPVAEE
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Template Sequence  TDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADLWKDVDR
Template Known Secondary structure 
TSS
TT
SS
TTTTTT
TT





T

STTTTTTT


TT
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   551........560.........570.........580.........590.........600.........610.........620.........630
 
   576...580.........590.........600.........610.........620.........630.........640.........650.....
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Query Sequence  SNSRRRPPTAGDRIKTSANDLVETLMKCQPSYIRTIKPNQTKSPNDYDQQMVLHQIKYLGLQENIRIRRAGFAYRQAFDT
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Template Sequence  IVGLFR. . TVGQLYKEQLTKLMTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEGIRICRQGFPNRIVFQE
Template Known Secondary structure  S




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TTS
S
SS

SS


TS
S

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   631..... ...640.........650.........660.........670.........680.........690.........700........
 
   656...660.........670.........680.........690.........700.........710.........720.........730.....
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Query Sequence  FAQRFAVLSGKTSYAGEYTWQGDDKSACEQILKDTNIPSSEYQMGTSKVFIKNPETLFALEDMRDKFWDTMATRIQRAWR
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Template Sequence  FRQRYEILAANAI. . . . PKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRT. GVLAHLEEERDLKITDVIIAFQAQCR
Template Known Secondary structure  TTTTGGGTTSS....
S



TTT

TTT
SS

S.STTTSS

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   730.........740.. .......750.........760.........770........ .780.........790.........800....
 
   736...740... ......750..... ....760.........770.........780.....
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Query Sequence  SYVRRRSE. . . . . . . . AAACIQKLWNRN. . . . . . . . . . . . . . . . . . . . . . KVNMELERVRNEGTKLLQGKKQRRRYSILG
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Template Sequence  GYLARKAFAKRQQQLTAMKVIQRNCAAYLKLRNWQWWRLFTKVKPLLQSAEREKEMASMKEEFTRLKEALEKSEARRKEL
Template Known Secondary structure  TTTS

SSS


SSSSTTS
S
TT
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   805....810.........820.........830.........840.........850.........860.........870.........880....
 
   786...790.........800.........810.........820.........830.........840.........850.........860.....
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Query Sequence  SRKFYGDYLSASKPNGTLWNTCGLSQNDHVIFSMRCEVLVHKLGRTSKPSPRQLVLTKKNLYLVITKIVDQKLTQQVEKK
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Template Sequence  EEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNERLEDEEEMNAELTAKKRKLEDECSELKRD
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   885....890.........900.........910.........920.........930.........940.........950.........960....
 
   866.
Predicted Secondary structure 

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Query Sequence  FA
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Template Conservation 

Template Sequence  ID
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 

   965.
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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