Job Description Q9Y7Z8 Confidence 100.00% Date Sun Jul 8 12:04:58 BST 2012 Rank 2 Aligned Residues 774 % Identity 34% Template c1i84V_ PDB info PDB header:contractile protein Chain: V: PDB Molecule:smooth muscle myosin heavy chain; PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment. Resolution 20.00 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Y	T	S	T	R	K	K	T	V	G	V	D	D	L	T	L	L	S	K	I	T	D	E	E	I	N	K	N	L	E	L	R	F	R	N	G	E	I	Y	T	Y	I	G	H	V	L	I	S	V	N	P	F	R	D	L	G	I	Y	T	M	D	I	L	K	S	Y	Q	G	K	N	R	L	E	T	S	P	H	V	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	Q	K	M	N	P	P	K	F	S	K	V	E	D	M	A	E	L	T	C	L	N	E	A	S	V	L	H	N	L	R	E	R	Y	F	S	G	L	I	Y	T	Y	S	G	L	F	C	V	V	I	N	P	Y	K	Q	L	P	I	Y	S	E	K	I	I	D	M	Y	K	G	K	K	R	H	E	M	P	P	H	I	Y
Template Known Secondary structure								G	G	G	T	T		S	B	T	T	S	S	S				T	T													T							T	T									S			S			S								S	S			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.							.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.
Query Sequence		A	I	A	E	N	A	Y	Y	Q	M	K	S	Y	H	E	N	Q	C	I	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	R	I	M	Q	Y	I	T	H	V	S	K	S	V	G	T	E	I	E	R	.	.	.	.	.	.	V	S	E	I	I	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L
Query Conservation																																																							.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.
Template Conservation
Template Sequence		A	I	A	D	T	A	Y	R	S	M	L	Q	D	R	E	D	Q	S	I	L	C	T	G	E	S	G	A	G	K	T	E	N	T	K	K	V	I	Q	Y	L	A	V	V	A	S	S	H	K	G	K	Q	G	P	S	F	S	Y	G	E	L	E	K	Q	L	L	Q	A	N	P	I	L	E	A	F	G	N	A	K	T	V
Template Known Secondary structure															T										S	T	T	S	S	T	T														S	S			S				T	T						S													T	T	T	T					T
Template Predicted Secondary structure
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	N	N	N	S	S	R	H	G	K	Y	L	E	M	I	F	N	S	G	G	V	P	V	G	A	K	I	T	N	Y	L	L	E	K	N	R	I	V	N	Q	V	R	N	E	R	N	F	H	I	F	Y	Q	F	T	K	S	A	P	Q	K	Y	R	D	T	Y	G	I	Q	G	P	E	N	Y	V	Y	T	S	A	C	Q
Query Conservation
Alig confidence																																																																																	.
Template Conservation																																																																																	.
Template Sequence		K	N	D	N	S	S	R	F	G	K	F	I	R	I	N	F	D	V	T	G	Y	I	V	G	A	N	I	E	T	Y	L	L	E	K	S	R	A	I	R	Q	A	K	D	E	R	T	F	H	I	F	Y	Y	L	I	A	G	A	S	E	Q	M	R	N	D	L	L	L	E	G	F	N	N	Y	T	F	L	S	N	G	.
Template Known Secondary structure		T							S										S	S	S															G	G	G	S				T	T					T																	T	T				T	T	S		S	S		T	T	S	.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		C	L	S	V	D	G	I	S	D	E	K	D	F	Q	G	T	M	N	A	M	K	V	I	G	I	T	E	P	E	Q	D	E	I	F	R	M	L	S	I	I	L	W	L	G	N	I	Q	F	Q	E	.	G	Q	D	G	G	S	V	I	S	D	K	S	I	T	E	F	L	G	Y	L	I	G	V	P	V	A	A	I	E
Query Conservation																																																				.
Alig confidence																																																				.
Template Conservation
Template Sequence		H	V	P	I	P	A	Q	Q	D	D	E	M	F	Q	E	T	L	E	A	M	T	I	M	G	F	T	E	E	E	Q	T	S	I	L	R	V	V	S	S	V	L	Q	L	G	N	I	V	F	K	K	E	R	N	T	D	Q	A	S	M	P	D	N	T	A	A	Q	K	V	C	H	L	M	G	I	N	V	T	D	F	T
Template Known Secondary structure		S				T	T																		T																			T	T	T				B			T	T	T	S			B				S										T	T	S
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		344	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	L	T	I	R	I	M	Q	T	Q	H	G	A	R	R	G	S	V	Y	E	V	P	L	N	P	T	Q	A	L	A	V	R	D	A	L	S	M	A	I	Y	N	C	L	F	D	W	I	V	E	R	V	N	K	A	L	V	T	S	D	N	S	V	S	N	S	I	G	I	L	D	I	Y	G	F	E	I	F	E	N
Query Conservation
Alig confidence												.	.	.	.	.																																												.	.	.	.	.	.
Template Conservation												.	.	.	.	.																																												.	.	.	.	.	.
Template Sequence		R	S	I	L	T	P	R	I	K	V	.	.	.	.	.	G	R	D	V	V	Q	K	A	Q	T	K	E	Q	A	D	F	A	I	E	A	L	A	K	A	K	F	E	R	L	F	R	W	I	L	T	R	V	N	K	A	L	D	A	.	.	.	.	.	.	S	F	L	G	I	L	D	I	A	G	F	E	I	F	E	I
Template Known Secondary structure						S						.	.	.	.	.	T	T	S																																			T	T	T				.	.	.	.	.	.															S	S
Template Predicted Secondary structure												.	.	.	.	.																																												.	.	.	.	.	.
Template SS confidence
		400	.	.	.	.	.	.	.	.	.						410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.							.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.		.	.	470	.	.	.	.	.	.	.	.	.		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure																																														.													.
Query SS confidence																																														.													.
Query Sequence		N	S	F	E	Q	L	C	I	N	Y	V	N	E	K	L	Q	Q	I	F	I	E	L	T	L	K	T	E	Q	E	E	Y	V	R	E	Q	I	A	W	T	P	I	K	Y	F	.	N	N	K	V	V	C	D	L	I	E	S	K	.	R	P	P	G	L	F	A	A	M	N	D	A	I	A	T	A	H	A	D	S	A	A
Query Conservation																																														.													.
Alig confidence																																														.													.																		.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		N	S	F	E	Q	L	C	I	N	Y	T	N	E	K	L	Q	Q	L	F	N	H	T	M	F	I	L	E	Q	E	E	Y	Q	R	E	G	I	E	W	N	F	I	D	F	G	L	D	L	Q	P	C	I	E	L	I	E	R	P	T	N	P	P	G	V	L	A	L	L	D	E	E	C	W	F	P	K	.	.	.	.	A
Template Known Secondary structure		B																							T											T		S																T	T	S			S	S	S										T	T	S		T	T	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.					550
		502	.	.	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.	520	.	.	.						.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.
Predicted Secondary structure												.													.	.	.	.	.
Query SS confidence												.													.	.	.	.	.
Query Sequence		A	D	S	A	F	A	Q	R	L	N	.	F	L	S	S	N	P	H	F	E	Q	R	Q	.	.	.	.	.	N	Q	F	I	V	K	H	Y	A	G	D	V	T	Y	S	I	T	G	M	T	D	K	N	K	D	Q	L	A	T	D	I	L	N	L	I	H	S	S	N	N	E	F	M	K	S	I	F	P	V	A	E	E
Query Conservation												.													.	.	.	.	.
Alig confidence												.													.	.	.	.	.
Template Conservation
Template Sequence		T	D	T	S	F	V	E	K	L	I	Q	E	Q	G	N	H	A	K	F	Q	K	S	K	Q	L	K	D	K	T	E	F	C	I	L	H	Y	A	G	K	V	T	Y	N	A	S	A	W	L	T	K	N	M	D	P	L	N	D	N	V	T	S	L	L	N	Q	S	S	D	K	F	V	A	D	L	W	K	D	V	D	R
Template Known Secondary structure														T	S	S		T	T					S	S		T	T	T								S	S								T	T																			T		S									S			T	T
Template Predicted Secondary structure
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	S	R	R	R	P	P	T	A	G	D	R	I	K	T	S	A	N	D	L	V	E	T	L	M	K	C	Q	P	S	Y	I	R	T	I	K	P	N	Q	T	K	S	P	N	D	Y	D	Q	Q	M	V	L	H	Q	I	K	Y	L	G	L	Q	E	N	I	R	I	R	R	A	G	F	A	Y	R	Q	A	F	D	T
Query Conservation
Alig confidence								.	.
Template Conservation								.	.
Template Sequence		I	V	G	L	F	R	.	.	T	V	G	Q	L	Y	K	E	Q	L	T	K	L	M	T	T	L	R	N	T	N	P	N	F	V	R	C	I	I	P	N	H	E	K	R	A	G	K	L	D	A	H	L	V	L	E	Q	L	R	C	N	G	V	L	E	G	I	R	I	C	R	Q	G	F	P	N	R	I	V	F	Q	E
Template Known Secondary structure								.	.																		T	T	S												S	S			S	S														T	T											S
Template Predicted Secondary structure								.	.
Template SS confidence
		631	.	.	.	.	.			.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	Q	R	F	A	V	L	S	G	K	T	S	Y	A	G	E	Y	T	W	Q	G	D	D	K	S	A	C	E	Q	I	L	K	D	T	N	I	P	S	S	E	Y	Q	M	G	T	S	K	V	F	I	K	N	P	E	T	L	F	A	L	E	D	M	R	D	K	F	W	D	T	M	A	T	R	I	Q	R	A	W	R
Query Conservation
Alig confidence															.	.	.	.																																					.
Template Conservation															.	.	.	.																																					.
Template Sequence		F	R	Q	R	Y	E	I	L	A	A	N	A	I	.	.	.	.	P	K	G	F	M	D	G	K	Q	A	C	I	L	M	I	K	A	L	E	L	D	P	N	L	Y	R	I	G	Q	S	K	I	F	F	R	T	.	G	V	L	A	H	L	E	E	E	R	D	L	K	I	T	D	V	I	I	A	F	Q	A	Q	C	R
Template Known Secondary structure						T	T	T	T		T	T	T	S	.	.	.	.		S	S														T	T	T			T	T	T			B		S	S						T	.	T													T
Template Predicted Secondary structure															.	.	.	.																																					.
Template SS confidence
		730	.	.	.	.	.	.	.	.	.	740	.	.					.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.		.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.
		736	.	.	.	740	.	.	.									.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.															760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	Y	V	R	R	R	S	E	.	.	.	.	.	.	.	.	A	A	A	C	I	Q	K	L	W	N	R	N	K	V	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	E	R	V	R	N	E	G	T	K	L	L	Q	G	K	K	Q	R	R	R	Y	S	I	L	G	S	R	K	F	Y	G	D	Y
Query Conservation										.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Y	L	A	R	K	A	F	A	K	R	Q	Q	Q	L	E	S	I	F	C	I	Q	Y	N	V	R	S	F	M	N	V	H	W	P	W	M	L	F	F	I	P	L	L	K	V	T	R	Q	E	E	E	M	Q	A	K	D	E	E	L	Q	R	T	K	E	R	Q	Q	K	A	E	A	E	L	K	E	L	E	Q	K	H
Template Known Secondary structure																																			T	T										S								T
Template Predicted Secondary structure
Template SS confidence
		805	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.
		794	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	A	S	K	P	N	G	T	L	W	N	T	C	G	L	S	Q	N	D	H	V	I	F	S	M	R	C	E	V	L	V	H	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Q	L	C	E	E	K	N	L	L	Q	E	K	L	Q	A	E	T	E	L	Y	A	E	A	E	E	M	R	V	R	L	A	A	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		889	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.