Job Description Q9Y7Z8 Confidence 100.00% Date Sun Jul 8 12:04:58 BST 2012 Rank 10 Aligned Residues 807 % Identity 32% Template c1g8xB_ PDB info PDB header:structural protein Chain: B: PDB Molecule:myosin ii heavy chain fused to alpha-actinin 3; PDBTitle: structure of a genetically engineered molecular motor Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	L	K	R	T	N	R	A	K	A	A	T	A	A	A	P	N	S	T	G	K	S	N	G	I	K	K	A	V	Y	T	S	T	R	K	K	T	V	G	V	D	D	L	T	L	L	S	K	I	T	D	E	E	I	N	K	N	L	E	L	R	F	R	N	G	E	I	Y	T	Y	I	G	H	V	L	I	S	V	N
Query Conservation
Alig confidence																													.	.
Template Conservation																													.	.
Template Sequence		G	E	I	V	S	E	T	S	D	S	F	T	F	K	T	V	D	G	Q	D	R	Q	V	K	K	D	D	.	.	A	N	Q	R	N	P	I	K	F	D	G	V	E	D	M	S	E	L	S	Y	L	N	E	P	A	V	F	H	N	L	R	V	R	Y	N	Q	D	L	I	Y	T	Y	S	G	L	F	L	V	A	V	N
Template Known Secondary structure									S	S							S	S	S							T	T	T	.	.			B				G	G	G	T	T		S	B	G	G	G		S	S															T	T	T							T	T
Template Predicted Secondary structure																													.	.
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	F	R	D	L	G	I	Y	T	M	D	I	L	K	S	Y	Q	G	K	N	R	L	E	T	S	P	H	V	Y	A	I	A	E	N	A	Y	Y	Q	M	K	S	Y	H	E	N	Q	C	I	I	I	S	G	E	S	G	A	G	K	T	E	A	A	K	R	I	M	Q	Y	I	T	H	V	S	K	S	V	G	T	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	F	K	R	I	P	I	Y	T	Q	E	M	V	D	I	F	K	G	R	R	R	N	E	V	A	P	H	I	F	A	I	S	D	V	A	Y	R	S	M	L	D	D	R	Q	N	Q	S	L	L	I	T	G	E	S	G	A	G	K	T	E	N	T	K	K	V	I	Q	Y	L	A	S	V	A	G	R	N	Q	A	N	G
Template Known Secondary structure			S	S			S			S							T	T	T			T	T	T	S																			T										S	T	T	S	S																	S		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		162	.		.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure				.
Query SS confidence				.
Query Sequence		E	R	.	V	S	E	I	I	L	A	T	N	P	L	L	E	S	F	G	C	A	K	T	L	R	N	N	N	S	S	R	H	G	K	Y	L	E	M	I	F	N	S	G	G	V	P	V	G	A	K	I	T	N	Y	L	L	E	K	N	R	I	V	N	Q	V	R	N	E	R	N	F	H	I	F	Y	Q	F	T	K	S
Query Conservation				.
Alig confidence				.
Template Conservation
Template Sequence		S	G	V	L	E	Q	Q	I	L	Q	A	N	P	I	L	E	A	F	G	N	A	K	T	T	R	N	N	N	S	S	E	F	G	K	F	I	E	I	Q	F	N	N	A	G	F	I	S	G	A	S	I	Q	S	Y	L	L	E	K	S	R	V	V	F	Q	S	E	T	E	R	N	Y	H	I	F	Y	Q	L	L	A	G
Template Known Secondary structure		G	G	G																					S	S		T	T			S	S										T	T	S														G	G	G	G	T				T	T				B
Template Predicted Secondary structure
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	Q	K	Y	R	D	T	Y	G	I	Q	G	P	E	N	Y	V	Y	T	S	A	C	Q	C	L	S	V	D	G	I	S	D	E	K	D	F	Q	G	T	M	N	A	M	K	V	I	G	I	T	E	P	E	Q	D	E	I	F	R	M	L	S	I	I	L	W	L	G	N	I	Q	F	Q	E	G	Q	D	G	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	A	E	E	K	K	A	L	H	L	A	G	P	E	S	F	N	Y	L	N	Q	S	G	C	V	D	I	K	G	V	S	D	E	D	E	F	K	I	T	R	Q	A	M	D	I	V	G	F	S	Q	E	E	Q	M	S	I	F	K	I	I	A	G	I	L	H	L	G	N	I	K	F	E	K	G	A	G	E	G	A
Template Known Secondary structure								T	T	T	T				G	G	G	S	T	T	T	S	S	S	S					T	T																		T																												S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	S	D	K	S	I	T	E	F	L	G	Y	L	I	G	V	P	V	A	A	I	E	R	A	L	T	I	R	I	M	Q	T	Q	H	G	A	R	R	G	S	V	Y	E	V	P	L	N	P	T	Q	A	L	A	V	R	D	A	L	S	M	A	I	Y	N	C	L	F	D	W	I	V	E	R	V	N	K	A	L	V
Query Conservation
Alig confidence																																				.	.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		V	L	K	D	K	T	A	L	N	A	A	S	T	V	F	G	V	N	P	S	V	L	E	K	A	L	M	E	P	R	I	L	A	G	.	.	.	.	.	R	D	L	V	A	Q	H	L	N	V	E	K	S	S	S	S	R	D	A	L	V	K	A	L	Y	G	R	L	F	L	W	L	V	K	K	I	N	N	V	L	C
Template Known Secondary structure				S													T	S											S		B				T	.	.	.	.	.	T	S			B
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.						.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.		.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																				.
Query SS confidence																																																																				.
Query Sequence		T	S	D	N	S	V	S	N	S	I	G	I	L	D	I	Y	G	F	E	I	F	E	N	N	S	F	E	Q	L	C	I	N	Y	V	N	E	K	L	Q	Q	I	F	I	E	L	T	L	K	T	E	Q	E	E	Y	V	R	E	Q	I	A	W	T	P	I	K	Y	.	F	N	N	K	V	V	C	D	L	I	E	S	K
Query Conservation																																																																				.
Alig confidence						.	.																																																													.
Template Conservation						.	.
Template Sequence		S	E	R	K	.	.	A	Y	F	I	G	V	L	D	I	S	G	F	E	I	F	K	V	N	S	F	E	Q	L	C	I	N	Y	T	N	E	K	L	Q	Q	F	F	N	H	H	M	F	K	V	E	Q	E	E	Y	L	K	E	K	I	N	W	T	F	I	D	F	G	L	D	S	Q	A	T	I	D	L	I	D	G	R
Template Known Secondary structure			S			.	.	S															S	S	B																																G	G	G										S	S											T
Template Predicted Secondary structure						.	.
Template SS confidence
		443	.	.	.			.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.		.	.	.	.	.	.	.	.					520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure																																		.									.	.	.	.
Query SS confidence																																		.									.	.	.	.
Query Sequence		R	P	P	G	L	F	A	A	M	N	D	A	I	A	T	A	H	A	D	S	A	A	A	D	S	A	F	A	Q	R	L	N	.	F	L	S	S	N	P	H	F	.	.	.	.	E	Q	R	Q	N	Q	F	I	V	K	H	Y	A	G	D	V	T	Y	S	I	T	G	M	T	D	K	N	K	D	Q	L	A	T	D	I
Query Conservation																																		.									.	.	.	.
Alig confidence																			.	.	.	.												.									.	.	.	.
Template Conservation																			.	.	.	.
Template Sequence		Q	P	P	G	I	L	A	L	L	D	E	Q	S	V	F	P	N	.	.	.	.	A	T	D	N	T	L	I	T	K	L	H	S	H	F	S	K	K	N	A	K	Y	E	E	P	R	F	S	K	T	E	F	G	V	T	H	Y	A	G	Q	V	M	Y	E	I	Q	D	W	L	E	K	N	K	D	P	L	Q	Q	D	L
Template Known Secondary structure		T	T	T										T	T	S	T	T	.	.	.	.															T	T	S	S	T	T					S	S		S	S							T	T								T	T					T	T
Template Predicted Secondary structure																			.	.	.	.
Template SS confidence
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.					.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
		555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.				.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure																														.	.	.
Query SS confidence																														.	.	.
Query Sequence		L	N	L	I	H	S	S	N	N	E	F	M	K	S	I	F	P	V	A	E	E	S	N	S	R	R	R	P	.	.	.	P	T	A	G	D	R	I	K	T	S	A	N	D	L	V	E	T	L	M	K	C	Q	P	S	Y	I	R	T	I	K	P	N	Q	T	K	S	P	N	D	Y	D	Q	Q	M	V	L	H	Q	I
Query Conservation																														.	.	.
Alig confidence																														.	.	.
Template Conservation
Template Sequence		E	L	C	F	K	D	S	S	D	N	V	V	T	K	L	F	N	D	P	N	I	A	S	R	A	K	K	G	A	N	F	I	T	V	A	A	Q	Y	K	E	Q	L	A	S	L	M	A	T	L	E	T	T	N	P	H	F	V	R	C	I	I	P	N	N	K	Q	L	P	A	K	L	E	D	K	V	V	L	D	Q	L
Template Known Secondary structure							T		S	S															S		B		S	S	S	B																			T	T	S										S		S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		597	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.
		632	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	L	G	L	Q	E	N	I	R	I	R	R	A	G	F	A	Y	R	Q	A	F	D	T	F	A	Q	R	F	A	V	L	S	G	K	T	S	Y	A	G	E	Y	T	W	Q	G	D	D	K	S	A	C	E	Q	I	L	K	D	T	N	I	P	S	S	E	Y	Q	M	G	T	S	K	V	F	I	K	N	P	E	T
Query Conservation
Alig confidence																																											.	.	.	.	.																																.
Template Conservation																																											.	.	.	.	.																																.
Template Sequence		R	C	N	G	V	L	E	G	I	R	I	T	R	K	G	F	P	N	R	I	I	Y	A	D	F	V	K	R	Y	Y	L	L	A	P	N	V	P	R	D	A	E	.	.	.	.	.	D	S	Q	K	A	T	D	A	V	L	K	H	L	N	I	D	P	E	Q	Y	R	F	G	I	T	K	I	F	F	R	A	.	G	Q
Template Known Secondary structure				T	T									T	T	S															G	G	G	S	T	T			S			S	.	.	.	.	.													T	T			T	T	S					S	S						T	.	T
Template Predicted Secondary structure																																											.	.	.	.	.																																.
Template SS confidence
		677	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.						.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.		.	750
		712	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.															.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	A	L	E	D	M	R	D	K	F	W	D	T	M	A	T	R	I	Q	R	A	W	R	S	Y	V	R	R	R	S	E	A	A	A	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	Q	K	L	W	N	R	N	K	V	N	M	E	L	E	R	V	R	N	E	G	T	K	L	L	Q	G	K	K	Q
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	R	I	E	E	A	R	E	Q	R	L	G	S	E	Q	T	K	S	D	Y	L	K	R	A	N	E	L	V	Q	W	I	N	D	K	Q	A	S	L	E	S	R	D	F	G	D	S	I	E	S	V	Q	S	F	M	N	A	H	K	E	Y	K	K	T	E	K	P	P	K	G	Q	E	V	S	E	L	E	A	I	Y
Template Known Secondary structure																																									T						S	S															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		751	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830
		778	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	R	Y	S	I	L	G	S	R	K	F	Y	G	D	Y	L	S	A	S	K	P	N	G	T	L	W	N	T	C	G	L	S	Q	N	D	H	V	I	F	S	M	R	C	E	V	L	V	H	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	L	Q	T	K	L	R	L	I	K	R	E	P	F	V	A	P	A	G	L	T	P	N	E	I	D	S	T	W	S	A	L	E	K	A	E	Q	E	H	A	E	A	L	R	I	E	L	K	R
Template Known Secondary structure											T	T	S							T	T		S
Template Predicted Secondary structure
Template SS confidence
		831	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880