Phyre 2 alignment of C1P620 with c3ebnD_

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Job Description | C1P620
Confidence | 0.67% | Date | Thu Jan 5 10:56:18 GMT 2012
Rank | 43 | Aligned Residues | 23
% Identity | 39% | Template | c3ebnD_
PDB info | PDB header:hydrolase | Chain: D: PDB Molecule:replicase polyprotein 1ab; | PDBTitle: a special dimerization of sars-cov main protease c-terminal2 domain due to domain-swapping
Resolution | 2.40 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | M | L | E | S | I | I | N | L | V | S | S | G | . | . | . | . | . | . | . | . | . | . | . | A | V | D | S | H | T | P | Q | T | A | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | M | C | A | A | L | K | E | L | L | Q | N | G | M | N | G | R | T | I | L | G | S | T | I | L | E | D | E | F | T | P | F | D | V | V
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  | B | T | T | B | S | S |  |  |  | S |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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