Job Description A2P2R3 Confidence 99.54% Date Mon Jul 2 19:10:01 BST 2012 Rank 18 Aligned Residues 227 % Identity 23% Template c2vdcF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:glutamate synthase [nadph] large chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications. Resolution 9.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.									.	.	.	.	.	40	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		C	G	I	F	G	Y	C	N	F	L	I	E	K	T	R	G	E	I	I	D	T	L	I	E	G	L	Q	A	L	E	Y	K	E	.	.	.	.	.	.	.	.	Y	D	S	S	G	I	S	I	Q	G	D	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																		.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.
Template Sequence		C	G	V	G	F	I	A	A	I	D	G	K	P	R	R	.	S	V	V	E	K	G	I	E	A	L	K	A	V	W	H	R	G	A	V	D	A	D	G	K	T	G	D	G	A	G	I	H	V	A	V	P	Q	K	F	F	K	D	H	V	K	V	I	G	H	R	A	P	D	N	K	L	A	V	G	Q	V	F	L	P
Template Known Secondary structure										T	T				B		.											T	S		G	G	G	S				T	T	S																									T					S	S
Template Predicted Secondary structure																	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	S	L	D	A	Q	E	A	C	R	C	I	V	E	T	E	I	L	A	F	G	Y	Y	I	Y	G	W	R	Q	V	P	I	N	V	D	I	I	G	E	K	A	N	A	T	R	P	E	I	E	Q	I	I	V	G	N	N	K	G	V	S	D	E	Q	F	E	L	D	L	Y	I	I	R	R	R	I	E	K	A	V
Template Known Secondary structure		S	S																			T	T													G	G	G	S							T												T	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
															47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	L	E	S	L	N	I	Y	K	Q	T	G	K	I	S	S	L	K	E	E	I	D	L	Y	N	L	N	K	N	L	P	F	I	S	H	C	G	I	A	H	T	R	R	A	T	H	G	G	L	R	R	A	N	C	H	P	H	N	S	D	P	S	N	E	F	V	V	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.																																.	.	.	.	.	.	.
Template Conservation																																							.	.	.																																.	.	.	.	.	.	.
Template Sequence		K	G	E	Q	I	N	D	F	Y	I	C	S	L	S	A	R	S	I	I	Y	K	G	M	F	L	A	E	Q	L	T	T	F	Y	P	D	L	L	.	.	.	D	E	R	F	E	S	D	F	A	I	Y	H	Q	R	Y	S	T	N	T	F	P	T	W	P	L	A	Q	P	F	R	M	.	.	.	.	.	.	.	L	A
Template Known Secondary structure					T			S								S	S										G	G	G						G	G	G	G	.	.	.		T	T			B	S										S		S				G	G	G	S	S			S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.																																.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.								.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	N	G	V	I	T	N	F	A	N	L	K	A	L	L	M	A	K	G	Y	V	F	K	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	T	E	C	I	P	K	L	Y	K	H	I	Y	D	T	S	I	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	N	G	E	I	N	T	V	K	G	N	V	N	W	M	K	A	H	E	T	R	M	E	H	P	A	F	G	T	H	M	Q	D	L	K	P	V	I	G	V	G	L	S	D	S	G	S	L	D	T	V	F	E	V	M	V	R	A	G	R	T	A	P	M	V	K	M	M	L	V	P	Q	A	L	T	S	S	Q	T	T
Template Known Secondary structure							T	T													T	T				S	T	T	G	G	G						S	S	S		T	T																	T	T											S							S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
			159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.								.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.
Predicted Secondary structure		.																																															.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence		.																																															.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		.	G	Y	N	L	D	F	H	V	L	T	N	L	V	L	K	E	L	E	G	S	Y	G	L	L	C	T	S	S	H	F	P	D	E	V	V	A	A	R	K	G	S	P	L	V	I	G	.	.	.	.	.	.	.	V	K	G	K	T	D	M	D	V	N	F	V	E	V	E	Y	L	D	Q	.	.	.	.	E	E	D
Query Conservation		.																																															.	.	.	.	.	.	.																				.	.	.	.
Alig confidence		.																																															.	.	.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		P	D	N	H	K	A	L	I	Q	Y	C	N	S	V	M	E	P	W	D	G	P	A	A	L	A	M	T	D	G	R	W	V	V	G	G	M	D	R	N	G	L	R	P	M	R	Y	T	I	T	T	D	G	L	I	I	G	G	S	E	T	G	M	V	K	I	D	E	T	Q	V	I	E	K	G	R	L	G	P	G	E
Template Known Secondary structure																S					S	S							S	S	S								T	T			S								T	T	S						S	S	S		S	S				G	G	G									T	T
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		227	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	K	L	N	T	Q	T	K	S	S	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	I	A	V	D	L	Q	S	G	K	L	Y	R
Template Known Secondary structure							T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions