 |
| Job Description | P29366 | | Confidence | 20.98% | Date | Mon Jul 2 19:15:38 BST 2012 |
| Rank | 403 | Aligned Residues | 62 |
| % Identity | 11% | Template | d1cvja1 |
| SCOP info | Ferredoxin-like
| RNA-binding domain, RBD
| Canonical RBD
|
| Resolution | 2.60 |
|
 |
|   |   |
489 | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | |
|
|
|
|
. | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 |
| Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
I | F | A | L | M | L | K | G | D | T | T | Y | K | E | L | R | S | K | I | A | P | R | I | D | T | D | N | F | K | L | Q | T | K | L | F | D | G | S | . |
. |
. |
. |
. |
G | E | E | I | K | T | D | S | Q | V | S | N | I | I | Q | A | K | L | K | I | S | V | H | D |
| Query Conservation |   |
  |   |
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |   |   |   |   |   |
|   |
|
|
|   |   |   |   | . | . | . | . | . |   |   |   |
|   |   |
|   |
|
|   |   |   |
|   |   |   |   |
|   |   |   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |
|   |
|
|   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|   |
|   |   |   |   |   |
|   |   |
|
|   |   |
|   |
|   |   |   |   |
|
| Template Sequence |   |
L | Y | V | G | D | L | H | P | D | V | T | E | A | M | L | Y | E | K | F | S | P | A | G | P | I | L | S | I | R | V | C | R | D | M | I | T | R | R | S | L | G | Y | A | Y | V | N | F | Q | Q | P | A | D | A | E | R | A | L | D | T | M | N | F | D | V | I | K | G |
| Template Known Secondary structure |   |
 |  |  |  | S |
|
| T | T |
|
|  |  |  |  |  |  |  |  | G | G | G | S |
|  |  |  |  |  |  |  |  |
| T | T | T |
|
|  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  | T | T | S | T | T |
|  |  | T | T |
| Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|