Job Description P29366 Confidence 98.85% Date Mon Jul 2 19:15:38 BST 2012 Rank 227 Aligned Residues 207 % Identity 14% Template c2xkxB_ PDB info PDB header:structural protein Chain: B: PDB Molecule:disks large homolog 4; PDBTitle: single particle analysis of psd-95 in negative stain Resolution 22.9 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	F	K	L	S	K	R	D	S	N	G	S	K	G	R	I	T	S	A	D	I	S	T	P	S	H	D	N	G	S	V	I	K	H	I	K	T	V	P	V	R	Y	L	S	S	S	S	T	P	V	K	S	Q	R	D	S	S	P	K	N	R	H	N	S	K	D	I	T	S	P	E	K	V	I	K	A	K	Y	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	Y	S	Q	H	L	D	N	E	I	S	H	S	S	Y	L	G	T	D	Y	P	T	A	M	T	P	T	S	P	R	R	Y	S	P	V	A	K	D	L	L	G	E	E	D	I	P	R	E	P	R	R	I	V	I	H	R	G	S	T	G	L	G	F	N	I	V	G	G	E	D	G	E	G	I	F	I	S	F	I	L
Template Known Secondary structure		S	S	S							S						S		S	S	S								S	S	S				S			T	T	S	S		S	S					S									S	S	S										S	T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.											110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.
Predicted Secondary structure																			.											.	.	.	.	.	.	.	.	.	.																																								.	.
Query SS confidence																			.											.	.	.	.	.	.	.	.	.	.																																								.	.
Query Sequence		Y	Q	A	Q	T	S	K	E	L	S	F	M	E	G	E	F	F	.	Y	V	S	G	D	E	K	D	W	Y	.	.	.	.	.	.	.	.	.	.	K	A	S	N	P	S	T	G	K	E	G	V	V	P	K	T	Y	F	E	V	F	D	R	T	K	P	S	S	V	N	G	S	N	S	S	S	R	K	V	.	.	T
Query Conservation																			.											.	.	.	.	.	.	.	.	.	.																																								.	.
Alig confidence																			.											.	.	.	.	.	.	.	.	.	.																																								.	.
Template Conservation
Template Sequence		A	G	G	P	A	D	L	S	G	E	L	R	K	G	D	Q	I	L	S	V	N	G	V	D	L	R	N	A	S	H	E	Q	A	A	I	A	L	K	N	A	G	Q	T	V	T	I	I	A	Q	Y	K	P	E	E	Y	S	R	F	E	A	K	I	H	D	L	R	E	Q	L	M	N	S	S	L	G	S	G	T	A	S
Template Known Secondary structure		T	T	S						S				S	B							T	T				T	T													T		S	S														T	B	T	T	T	B							S					S			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.																															.	.	.
Query SS confidence																									.	.	.	.	.																															.	.	.
Query Sequence		N	D	S	L	N	M	G	S	L	Y	A	I	V	L	Y	D	F	K	A	E	K	A	D	.	.	.	.	.	E	L	T	T	Y	V	G	E	N	L	F	I	C	A	H	H	N	C	E	W	F	I	A	K	P	I	G	R	L	G	.	.	.	G	P	G	L	V	P	V
Query Conservation																									.	.	.	.	.																															.	.	.
Alig confidence																									.	.	.	.	.																															.	.	.
Template Conservation
Template Sequence		L	R	S	N	P	K	R	G	F	Y	I	R	A	L	F	D	Y	D	K	T	K	D	C	G	F	L	S	Q	A	L	S	F	R	F	G	D	V	L	H	V	I	D	A	G	D	E	E	W	W	Q	A	R	R	V	H	S	D	S	E	T	D	D	I	G	F	I	P	S
Template Known Secondary structure						S	S	S	S	S					S	S		B						S				S	S	B			B		T	T										S	S	S									S	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions