Return to main results Retrieve Phyre Job Id

Job DescriptionP29366
Confidence99.65%DateMon Jul 2 19:15:38 BST 2012
Rank18Aligned Residues96
% Identity20%Templatec2rqrA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:engulfment and cell motility protein 1, linker, dedicator PDBTitle: the solution structure of human dock2 sh3 domain - elmo1 peptide2 chimera complex
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   122.......130.........140.........150.........160.........170.........180.........190.........200.
Predicted Secondary structure 






















































Query SS confidence 















































































Query Sequence  VPKTYFEVFDRTKPSSVNGSNSSSRKVTNDSLNMGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRL
Query Conservation 

 



                               






 
    


   

 
 

   
  
         
Alig confidence 



































































.










Template Conservation       
                                  




 
    



  

 
 
 
   .  
        
Template Sequence  IPKEPSNYDFSGPSSGIEGRGSSGSSGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG. DWYRGYLIKHK
Template Known Secondary structure 




SS



SS


TTTT








S
S



B
S
B


STTB

B
TT
T.TSS
T
Template Predicted Secondary structure 















































.







Template SS confidence 















































































   24.....30.........40.........50.........60.........70.........80.........90. ........100..
 
   202.......210........
Predicted Secondary structure 





Query SS confidence 
















Query Sequence  GGPGLVPVGFVSIIDIA
Query Conservation 
  



  

 
    
Alig confidence 
















Template Conservation 
  
 

 


   
  
Template Sequence  MLQGIFPKSFIHIKEVT
Template Known Secondary structure  T
GGGB





Template Predicted Secondary structure 





Template SS confidence 
















   103......110.........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions