Job Description P29366 Confidence 98.02% Date Mon Jul 2 19:15:38 BST 2012 Rank 245 Aligned Residues 72 % Identity 13% Template c2ktrA_ PDB info PDB header:signaling protein, transport protein Chain: A: PDB Molecule:sequestosome-1; PDBTitle: nmr structure of p62 pb1 dimer determined based on pcs Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		478	.	480	.	.	.	.	.							.	.	.	.	490	.	.	.	.	.	.	.	.	.												500	.	.	.	.	.	.	.	.	.	510	.	.	.				.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.															.	.	.
Query SS confidence										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.															.	.	.
Query Sequence		T	T	K	I	K	F	Y	Y	.	.	.	.	.	.	K	D	D	I	F	A	L	M	L	K	G	D	T	T	.	.	.	.	.	.	.	.	.	.	.	Y	K	E	L	R	S	K	I	A	P	R	I	D	T	.	.	.	D	N	F	K	L	Q	T	K	L	F	D	G	S	G	E	E	I	K	T	D	S	Q	V	S
Query Conservation										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.															.	.	.
Alig confidence										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation
Template Sequence		S	L	T	V	K	A	Y	L	L	G	K	E	E	A	A	R	E	I	R	R	F	S	F	C	F	S	P	E	P	E	A	E	A	A	A	G	P	G	P	S	E	R	L	L	S	R	V	A	V	L	F	P	A	L	R	P	G	G	F	Q	A	H	Y	R	A	E	R	G	D	L	V	A	F	S	S	D	E	E	L	T
Template Known Secondary structure												S	S	S												S	S	S		S		S	S	S			S																T	T	S		S	S									T	T								S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		538	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	I	Q	A	K	L	K	I	S	V	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	A	M	S	Y	V	K	D	D	I	F	R
Template Known Secondary structure									S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions