Return to main results Retrieve Phyre Job Id

Job DescriptionP29366
Confidence99.40%DateMon Jul 2 19:15:38 BST 2012
Rank163Aligned Residues59
% Identity22%Templatec2js0A_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:cytoplasmic protein nck1; PDBTitle: solution structure of second sh3 domain of adaptor nck
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   154.....160.........170.........180.........190.........200.........210.....
Predicted Secondary structure 































Query SS confidence 





























































Query Sequence  NMGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSII
Query Conservation        






 
    


   

 
 

   
  
         
  



  

 
 
Alig confidence 










































...















Template Conservation 
     
 
 
 
      


   

 
 
       
    ...  
  
  
  

   
Template Sequence  GSLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGS. . . YNGQVGWFPSNYVTEE
Template Known Secondary structure 

SS
S
B


STTB

B
TT

SSS...TTGGGSS
Template Predicted Secondary structure 




















...



Template SS confidence 





























































   1........10.........20.........30.........40... ......50.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions