Job Description P29366 Confidence 98.71% Date Mon Jul 2 19:15:38 BST 2012 Rank 235 Aligned Residues 93 % Identity 22% Template c2i4kA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:sorting nexin-1; PDBTitle: solution structure of the px domain of sorting nexin 1 Resolution UNK

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		296	.	.	.		300	.	.	.	.	.	.	.					.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure						.									.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.									.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	K	Y	W	.	F	L	V	C	C	E	L	S	.	.	.	.	N	G	K	T	R	Q	L	K	R	Y	Y	Q	D	F	Y	D	L	Q	V	Q	L	L	D	A	F	P	A	E	A	G	K	L	R	D	A	G	G	Q	W	S	K	R	I	M	P	Y	I	P	G	P	V	P	.	.	.	.	.	.	.	.	.	.	.
Query Conservation						.									.	.	.	.																																																					.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.									.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	Y	V	A	Y	K	V	T	T	Q	T	S	L	P	L	F	R	S	K	Q	F	A	V	K	R	R	F	S	D	F	L	G	L	Y	E	K	L	S	E	K	H	S	Q	N	G	F	I	.	.	.	.	.	.	.	.	.	.	.	.	V	P	P	P	P	E	K	S	L	I	G	M	T	K	V	K	V	G	K	E
Template Known Secondary structure					B				B						S	S	S	S		S	S				B																	T		S	S	S	S			.	.	.	.	.	.	.	.	.	.	.	.			S	S	S	S			S	S	S	S	S	S					S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.													.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
			360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	Y	V	T	N	S	I	T	K	K	R	K	E	D	L	N	I	Y	V	A	D	L	V	N	L	P	D	Y	I	S	R	S	E	M	V	H	S	L	F	V	V	L	N
Query Conservation		.
Alig confidence		.																								.
Template Conservation																										.
Template Sequence		D	S	S	S	A	E	F	L	E	K	R	R	A	A	L	E	R	Y	L	Q	R	I	V	N	.	H	P	T	M	L	Q	D	P	D	V	R	E	F	L	E	K	E	E
Template Known Secondary structure				S	S	T	T																			.							S					T	T	T	T
Template Predicted Secondary structure																										.
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions